Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2349

Experiment: Ionizing radiation, 319.06 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2347 and Psest_2348 are separated by 1 nucleotidesPsest_2348 and Psest_2349 are separated by 11 nucleotidesPsest_2349 and Psest_2351 are separated by 158 nucleotides Psest_2347: Psest_2347 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,500,958 to 2,501,845 _2347 Psest_2348: Psest_2348 - urea carboxylase-associated protein 2, at 2,501,847 to 2,502,575 _2348 Psest_2349: Psest_2349 - urea carboxylase-associated protein 1, at 2,502,587 to 2,503,222 _2349 Psest_2351: Psest_2351 - urea carboxylase, at 2,503,381 to 2,506,980 _2351 Position (kb) 2502 2503 2504Strain fitness (log2 ratio) -3 -2 -1 0 1at 2501.744 kb on + strand, within Psest_2347at 2501.744 kb on + strand, within Psest_2347at 2501.744 kb on + strand, within Psest_2347at 2501.745 kb on - strand, within Psest_2347at 2501.745 kb on - strand, within Psest_2347at 2501.745 kb on - strand, within Psest_2347at 2501.745 kb on - strand, within Psest_2347at 2501.745 kb on - strand, within Psest_2347at 2501.832 kb on - strandat 2502.162 kb on - strand, within Psest_2348at 2502.180 kb on + strand, within Psest_2348at 2502.372 kb on + strand, within Psest_2348at 2502.384 kb on + strand, within Psest_2348at 2502.450 kb on + strand, within Psest_2348at 2502.568 kb on - strandat 2502.568 kb on - strandat 2502.568 kb on - strandat 2502.803 kb on + strand, within Psest_2349at 2502.803 kb on + strand, within Psest_2349at 2502.828 kb on - strand, within Psest_2349at 2502.948 kb on - strand, within Psest_2349at 2502.948 kb on - strand, within Psest_2349at 2503.106 kb on + strand, within Psest_2349at 2503.106 kb on + strand, within Psest_2349at 2503.106 kb on + strand, within Psest_2349at 2503.106 kb on + strand, within Psest_2349at 2503.106 kb on + strand, within Psest_2349at 2503.106 kb on + strand, within Psest_2349at 2503.106 kb on + strand, within Psest_2349at 2503.107 kb on - strand, within Psest_2349at 2503.164 kb on + strandat 2503.165 kb on - strandat 2503.340 kb on - strandat 2503.558 kb on + strandat 2503.981 kb on + strand, within Psest_2351at 2503.981 kb on + strand, within Psest_2351at 2503.981 kb on + strand, within Psest_2351at 2503.981 kb on + strand, within Psest_2351at 2503.982 kb on - strand, within Psest_2351at 2503.982 kb on - strand, within Psest_2351at 2504.010 kb on - strand, within Psest_2351at 2504.010 kb on - strand, within Psest_2351at 2504.010 kb on - strand, within Psest_2351at 2504.015 kb on + strand, within Psest_2351at 2504.015 kb on + strand, within Psest_2351at 2504.015 kb on + strand, within Psest_2351at 2504.015 kb on + strand, within Psest_2351at 2504.015 kb on + strand, within Psest_2351at 2504.016 kb on - strand, within Psest_2351at 2504.016 kb on - strand, within Psest_2351at 2504.016 kb on - strand, within Psest_2351at 2504.210 kb on - strand, within Psest_2351

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 319.06 Gy,
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2,501,744 + Psest_2347 0.89 -0.2
2,501,744 + Psest_2347 0.89 +0.0
2,501,744 + Psest_2347 0.89 +0.8
2,501,745 - Psest_2347 0.89 +1.7
2,501,745 - Psest_2347 0.89 -1.3
2,501,745 - Psest_2347 0.89 -0.7
2,501,745 - Psest_2347 0.89 +1.2
2,501,745 - Psest_2347 0.89 +1.4
2,501,832 - +1.0
2,502,162 - Psest_2348 0.43 -0.1
2,502,180 + Psest_2348 0.46 +0.9
2,502,372 + Psest_2348 0.72 +0.9
2,502,384 + Psest_2348 0.74 -3.3
2,502,450 + Psest_2348 0.83 -1.3
2,502,568 - +0.7
2,502,568 - -1.5
2,502,568 - -1.2
2,502,803 + Psest_2349 0.34 -1.3
2,502,803 + Psest_2349 0.34 -0.6
2,502,828 - Psest_2349 0.38 -0.4
2,502,948 - Psest_2349 0.57 -2.3
2,502,948 - Psest_2349 0.57 -0.2
2,503,106 + Psest_2349 0.82 -1.6
2,503,106 + Psest_2349 0.82 -0.6
2,503,106 + Psest_2349 0.82 -0.8
2,503,106 + Psest_2349 0.82 -1.2
2,503,106 + Psest_2349 0.82 +0.4
2,503,106 + Psest_2349 0.82 -1.9
2,503,106 + Psest_2349 0.82 -0.9
2,503,107 - Psest_2349 0.82 +0.7
2,503,164 + -0.1
2,503,165 - -1.3
2,503,340 - -2.8
2,503,558 + +0.7
2,503,981 + Psest_2351 0.17 -2.3
2,503,981 + Psest_2351 0.17 +0.7
2,503,981 + Psest_2351 0.17 +0.5
2,503,981 + Psest_2351 0.17 +0.1
2,503,982 - Psest_2351 0.17 +0.5
2,503,982 - Psest_2351 0.17 +0.0
2,504,010 - Psest_2351 0.17 -1.5
2,504,010 - Psest_2351 0.17 +0.3
2,504,010 - Psest_2351 0.17 -2.3
2,504,015 + Psest_2351 0.18 -0.2
2,504,015 + Psest_2351 0.18 +0.7
2,504,015 + Psest_2351 0.18 +0.8
2,504,015 + Psest_2351 0.18 -1.1
2,504,015 + Psest_2351 0.18 +1.2
2,504,016 - Psest_2351 0.18 -0.4
2,504,016 - Psest_2351 0.18 +0.7
2,504,016 - Psest_2351 0.18 +0.3
2,504,210 - Psest_2351 0.23 -1.5

Or see this region's nucleotide sequence