Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2064

Experiment: Ionizing radiation, 319.06 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2062 and Psest_2063 are separated by 63 nucleotidesPsest_2063 and Psest_2064 overlap by 20 nucleotidesPsest_2064 and Psest_2065 are separated by 1 nucleotides Psest_2062: Psest_2062 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,187,981 to 2,188,745 _2062 Psest_2063: Psest_2063 - Enoyl-[acyl-carrier-protein] reductase (NADH), at 2,188,809 to 2,189,603 _2063 Psest_2064: Psest_2064 - ABC-type uncharacterized transport system, duplicated ATPase component, at 2,189,584 to 2,191,245 _2064 Psest_2065: Psest_2065 - ABC-type uncharacterized transport system, permease component, at 2,191,247 to 2,192,266 _2065 Position (kb) 2189 2190 2191 2192Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2188.790 kb on + strandat 2188.791 kb on - strandat 2188.794 kb on + strandat 2189.674 kb on - strandat 2189.674 kb on - strandat 2190.551 kb on - strand, within Psest_2064at 2191.249 kb on - strandat 2191.249 kb on - strandat 2191.249 kb on - strandat 2191.566 kb on + strand, within Psest_2065at 2191.695 kb on - strand, within Psest_2065at 2191.699 kb on - strand, within Psest_2065

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 319.06 Gy,
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2,188,790 + -2.1
2,188,791 - +1.1
2,188,794 + -1.6
2,189,674 - -1.3
2,189,674 - +3.0
2,190,551 - Psest_2064 0.58 +1.4
2,191,249 - -1.3
2,191,249 - -0.9
2,191,249 - -0.2
2,191,566 + Psest_2065 0.31 +0.7
2,191,695 - Psest_2065 0.44 -0.9
2,191,699 - Psest_2065 0.44 -0.9

Or see this region's nucleotide sequence