Experiment: Ionizing radiation, 319.06 Gy,
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2062 and Psest_2063 are separated by 63 nucleotides Psest_2063 and Psest_2064 overlap by 20 nucleotides Psest_2064 and Psest_2065 are separated by 1 nucleotides
Psest_2062: Psest_2062 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,187,981 to 2,188,745
_2062
Psest_2063: Psest_2063 - Enoyl-[acyl-carrier-protein] reductase (NADH), at 2,188,809 to 2,189,603
_2063
Psest_2064: Psest_2064 - ABC-type uncharacterized transport system, duplicated ATPase component, at 2,189,584 to 2,191,245
_2064
Psest_2065: Psest_2065 - ABC-type uncharacterized transport system, permease component, at 2,191,247 to 2,192,266
_2065
Position (kb)
2189
2190
2191
2192 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2188.790 kb on + strand at 2188.791 kb on - strand at 2188.794 kb on + strand at 2189.674 kb on - strand at 2189.674 kb on - strand at 2190.551 kb on - strand, within Psest_2064 at 2191.249 kb on - strand at 2191.249 kb on - strand at 2191.249 kb on - strand at 2191.566 kb on + strand, within Psest_2065 at 2191.695 kb on - strand, within Psest_2065 at 2191.699 kb on - strand, within Psest_2065
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 319.06 Gy, remove 2,188,790 + -2.1 2,188,791 - +1.1 2,188,794 + -1.6 2,189,674 - -1.3 2,189,674 - +3.0 2,190,551 - Psest_2064 0.58 +1.4 2,191,249 - -1.3 2,191,249 - -0.9 2,191,249 - -0.2 2,191,566 + Psest_2065 0.31 +0.7 2,191,695 - Psest_2065 0.44 -0.9 2,191,699 - Psest_2065 0.44 -0.9
Or see this region's nucleotide sequence