Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1593

Experiment: Ionizing radiation, 319.06 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1591 and Psest_1592 overlap by 4 nucleotidesPsest_1592 and Psest_1593 are separated by 10 nucleotidesPsest_1593 and Psest_1594 are separated by 31 nucleotidesPsest_1594 and Psest_1595 are separated by 20 nucleotides Psest_1591: Psest_1591 - hypothetical protein, at 1,696,172 to 1,696,828 _1591 Psest_1592: Psest_1592 - hypothetical protein, at 1,696,825 to 1,697,379 _1592 Psest_1593: Psest_1593 - hypothetical protein, at 1,697,390 to 1,697,740 _1593 Psest_1594: Psest_1594 - Predicted metal-binding protein, at 1,697,772 to 1,698,218 _1594 Psest_1595: Psest_1595 - Copper chaperone, at 1,698,239 to 1,698,496 _1595 Position (kb) 1697 1698Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1696.545 kb on + strand, within Psest_1591at 1696.545 kb on + strand, within Psest_1591at 1696.545 kb on + strand, within Psest_1591at 1696.545 kb on + strand, within Psest_1591at 1696.546 kb on - strand, within Psest_1591at 1696.546 kb on - strand, within Psest_1591at 1696.546 kb on - strand, within Psest_1591at 1696.547 kb on + strand, within Psest_1591at 1696.547 kb on + strand, within Psest_1591at 1696.547 kb on + strand, within Psest_1591at 1696.548 kb on - strand, within Psest_1591at 1696.548 kb on - strand, within Psest_1591at 1696.815 kb on + strandat 1696.815 kb on + strandat 1696.816 kb on - strandat 1696.816 kb on - strandat 1696.816 kb on - strandat 1696.816 kb on - strandat 1696.816 kb on - strandat 1696.858 kb on - strandat 1696.900 kb on + strand, within Psest_1592at 1696.900 kb on + strand, within Psest_1592at 1696.900 kb on + strand, within Psest_1592at 1696.900 kb on + strand, within Psest_1592at 1696.900 kb on + strand, within Psest_1592at 1696.901 kb on - strand, within Psest_1592at 1696.901 kb on - strand, within Psest_1592at 1696.901 kb on - strand, within Psest_1592at 1696.901 kb on - strand, within Psest_1592at 1697.108 kb on + strand, within Psest_1592at 1697.108 kb on + strand, within Psest_1592at 1697.209 kb on + strand, within Psest_1592at 1697.210 kb on - strand, within Psest_1592at 1697.332 kb on + strandat 1697.332 kb on + strandat 1697.391 kb on + strandat 1697.428 kb on + strand, within Psest_1593at 1697.544 kb on + strand, within Psest_1593at 1697.545 kb on - strand, within Psest_1593at 1697.556 kb on + strand, within Psest_1593at 1697.556 kb on + strand, within Psest_1593at 1697.556 kb on + strand, within Psest_1593at 1697.557 kb on - strand, within Psest_1593at 1697.557 kb on - strand, within Psest_1593at 1697.557 kb on - strand, within Psest_1593at 1697.557 kb on - strand, within Psest_1593at 1697.601 kb on + strand, within Psest_1593at 1697.601 kb on + strand, within Psest_1593at 1697.601 kb on + strand, within Psest_1593at 1697.602 kb on - strand, within Psest_1593at 1697.602 kb on - strand, within Psest_1593at 1697.602 kb on - strand, within Psest_1593at 1697.602 kb on - strand, within Psest_1593at 1697.718 kb on + strandat 1697.718 kb on + strandat 1697.718 kb on + strandat 1697.718 kb on + strandat 1697.719 kb on - strandat 1697.719 kb on - strandat 1697.798 kb on - strandat 1697.869 kb on + strand, within Psest_1594at 1697.869 kb on + strand, within Psest_1594at 1698.076 kb on - strand, within Psest_1594at 1698.100 kb on + strand, within Psest_1594at 1698.100 kb on + strand, within Psest_1594at 1698.100 kb on + strand, within Psest_1594at 1698.100 kb on + strand, within Psest_1594at 1698.100 kb on + strand, within Psest_1594at 1698.101 kb on - strand, within Psest_1594at 1698.208 kb on + strandat 1698.208 kb on + strandat 1698.209 kb on - strandat 1698.209 kb on - strandat 1698.244 kb on + strandat 1698.272 kb on + strand, within Psest_1595at 1698.558 kb on + strandat 1698.559 kb on - strandat 1698.627 kb on + strandat 1698.627 kb on + strandat 1698.692 kb on + strandat 1698.693 kb on - strandat 1698.696 kb on + strandat 1698.697 kb on - strandat 1698.714 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 319.06 Gy,
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1,696,545 + Psest_1591 0.57 -0.4
1,696,545 + Psest_1591 0.57 +0.3
1,696,545 + Psest_1591 0.57 +1.1
1,696,545 + Psest_1591 0.57 -1.0
1,696,546 - Psest_1591 0.57 -1.6
1,696,546 - Psest_1591 0.57 +0.1
1,696,546 - Psest_1591 0.57 +0.9
1,696,547 + Psest_1591 0.57 +0.2
1,696,547 + Psest_1591 0.57 -1.8
1,696,547 + Psest_1591 0.57 -0.9
1,696,548 - Psest_1591 0.57 +0.4
1,696,548 - Psest_1591 0.57 -1.2
1,696,815 + +0.1
1,696,815 + +0.9
1,696,816 - -1.6
1,696,816 - -1.4
1,696,816 - +0.4
1,696,816 - -0.2
1,696,816 - -0.6
1,696,858 - +0.9
1,696,900 + Psest_1592 0.14 +0.4
1,696,900 + Psest_1592 0.14 -2.2
1,696,900 + Psest_1592 0.14 +0.5
1,696,900 + Psest_1592 0.14 +0.6
1,696,900 + Psest_1592 0.14 -0.2
1,696,901 - Psest_1592 0.14 -0.4
1,696,901 - Psest_1592 0.14 -0.7
1,696,901 - Psest_1592 0.14 +0.7
1,696,901 - Psest_1592 0.14 -0.4
1,697,108 + Psest_1592 0.51 +0.6
1,697,108 + Psest_1592 0.51 -1.5
1,697,209 + Psest_1592 0.69 +0.8
1,697,210 - Psest_1592 0.69 -0.4
1,697,332 + -0.6
1,697,332 + -2.3
1,697,391 + -0.2
1,697,428 + Psest_1593 0.11 -0.1
1,697,544 + Psest_1593 0.44 -0.0
1,697,545 - Psest_1593 0.44 -2.4
1,697,556 + Psest_1593 0.47 -0.2
1,697,556 + Psest_1593 0.47 +2.3
1,697,556 + Psest_1593 0.47 -2.4
1,697,557 - Psest_1593 0.48 -2.4
1,697,557 - Psest_1593 0.48 -1.4
1,697,557 - Psest_1593 0.48 +2.0
1,697,557 - Psest_1593 0.48 -2.2
1,697,601 + Psest_1593 0.60 +0.2
1,697,601 + Psest_1593 0.60 -1.8
1,697,601 + Psest_1593 0.60 -1.1
1,697,602 - Psest_1593 0.60 -1.8
1,697,602 - Psest_1593 0.60 +0.2
1,697,602 - Psest_1593 0.60 -1.3
1,697,602 - Psest_1593 0.60 +0.6
1,697,718 + +0.8
1,697,718 + +0.0
1,697,718 + -2.2
1,697,718 + -0.1
1,697,719 - -0.1
1,697,719 - +1.1
1,697,798 - -0.8
1,697,869 + Psest_1594 0.22 -0.7
1,697,869 + Psest_1594 0.22 +0.4
1,698,076 - Psest_1594 0.68 -1.3
1,698,100 + Psest_1594 0.73 +0.3
1,698,100 + Psest_1594 0.73 -0.4
1,698,100 + Psest_1594 0.73 +1.0
1,698,100 + Psest_1594 0.73 -2.1
1,698,100 + Psest_1594 0.73 -2.2
1,698,101 - Psest_1594 0.74 -0.2
1,698,208 + +1.3
1,698,208 + +3.8
1,698,209 - +0.6
1,698,209 - -1.2
1,698,244 + -0.2
1,698,272 + Psest_1595 0.13 +1.0
1,698,558 + -2.0
1,698,559 - -1.1
1,698,627 + -2.6
1,698,627 + -0.1
1,698,692 + +0.2
1,698,693 - +2.1
1,698,696 + +0.7
1,698,697 - +0.0
1,698,714 - -1.3

Or see this region's nucleotide sequence