Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0991

Experiment: Ionizing radiation, 319.06 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0990 and Psest_0991 are separated by 85 nucleotidesPsest_0991 and Psest_0992 are separated by 65 nucleotides Psest_0990: Psest_0990 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 1,070,587 to 1,073,478 _0990 Psest_0991: Psest_0991 - Predicted SAM-dependent methyltransferases, at 1,073,564 to 1,074,580 _0991 Psest_0992: Psest_0992 - Uncharacterized protein conserved in bacteria, at 1,074,646 to 1,075,521 _0992 Position (kb) 1073 1074 1075Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1072.790 kb on + strand, within Psest_0990at 1072.791 kb on - strand, within Psest_0990at 1072.791 kb on - strand, within Psest_0990at 1072.951 kb on - strand, within Psest_0990at 1072.951 kb on - strand, within Psest_0990at 1072.977 kb on - strand, within Psest_0990at 1072.989 kb on + strand, within Psest_0990at 1072.989 kb on + strand, within Psest_0990at 1072.990 kb on - strand, within Psest_0990at 1072.990 kb on - strand, within Psest_0990at 1072.990 kb on - strand, within Psest_0990at 1072.990 kb on - strand, within Psest_0990at 1073.162 kb on + strand, within Psest_0990at 1073.162 kb on + strand, within Psest_0990at 1073.162 kb on + strand, within Psest_0990at 1073.162 kb on + strand, within Psest_0990at 1073.162 kb on + strand, within Psest_0990at 1073.163 kb on - strand, within Psest_0990at 1073.163 kb on - strand, within Psest_0990at 1073.163 kb on - strand, within Psest_0990at 1073.163 kb on - strand, within Psest_0990at 1073.163 kb on - strand, within Psest_0990at 1073.163 kb on - strand, within Psest_0990at 1073.163 kb on - strand, within Psest_0990at 1073.235 kb on - strandat 1073.325 kb on + strandat 1073.326 kb on - strandat 1073.354 kb on + strandat 1073.355 kb on - strandat 1073.488 kb on + strandat 1073.489 kb on - strandat 1073.515 kb on + strandat 1073.516 kb on - strandat 1073.791 kb on - strand, within Psest_0991at 1073.852 kb on + strand, within Psest_0991at 1073.853 kb on - strand, within Psest_0991at 1073.956 kb on - strand, within Psest_0991at 1073.956 kb on - strand, within Psest_0991at 1074.101 kb on - strand, within Psest_0991at 1074.101 kb on - strand, within Psest_0991at 1074.102 kb on + strand, within Psest_0991at 1074.102 kb on + strand, within Psest_0991at 1074.102 kb on + strand, within Psest_0991at 1074.127 kb on + strand, within Psest_0991at 1074.212 kb on + strand, within Psest_0991at 1074.327 kb on + strand, within Psest_0991at 1074.598 kb on + strandat 1074.648 kb on - strandat 1074.883 kb on + strand, within Psest_0992at 1074.883 kb on + strand, within Psest_0992at 1074.893 kb on - strand, within Psest_0992at 1074.893 kb on - strand, within Psest_0992at 1074.893 kb on - strand, within Psest_0992at 1074.945 kb on - strand, within Psest_0992at 1074.945 kb on - strand, within Psest_0992at 1075.019 kb on + strand, within Psest_0992at 1075.019 kb on + strand, within Psest_0992at 1075.022 kb on + strand, within Psest_0992at 1075.023 kb on - strand, within Psest_0992at 1075.448 kb on + strandat 1075.555 kb on + strandat 1075.558 kb on + strandat 1075.558 kb on + strandat 1075.558 kb on + strandat 1075.558 kb on + strandat 1075.558 kb on + strandat 1075.559 kb on - strandat 1075.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 319.06 Gy,
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1,072,790 + Psest_0990 0.76 -0.5
1,072,791 - Psest_0990 0.76 +1.7
1,072,791 - Psest_0990 0.76 -1.6
1,072,951 - Psest_0990 0.82 -1.9
1,072,951 - Psest_0990 0.82 -0.7
1,072,977 - Psest_0990 0.83 +0.4
1,072,989 + Psest_0990 0.83 -0.6
1,072,989 + Psest_0990 0.83 +0.2
1,072,990 - Psest_0990 0.83 -1.1
1,072,990 - Psest_0990 0.83 +2.1
1,072,990 - Psest_0990 0.83 +0.7
1,072,990 - Psest_0990 0.83 -1.0
1,073,162 + Psest_0990 0.89 -0.4
1,073,162 + Psest_0990 0.89 +2.7
1,073,162 + Psest_0990 0.89 +1.7
1,073,162 + Psest_0990 0.89 -1.2
1,073,162 + Psest_0990 0.89 -0.8
1,073,163 - Psest_0990 0.89 -0.4
1,073,163 - Psest_0990 0.89 -1.4
1,073,163 - Psest_0990 0.89 -1.2
1,073,163 - Psest_0990 0.89 +0.9
1,073,163 - Psest_0990 0.89 +1.2
1,073,163 - Psest_0990 0.89 -0.9
1,073,163 - Psest_0990 0.89 +1.4
1,073,235 - +1.5
1,073,325 + +0.3
1,073,326 - -0.7
1,073,354 + +1.5
1,073,355 - +0.7
1,073,488 + -1.5
1,073,489 - -1.4
1,073,515 + +1.6
1,073,516 - +0.5
1,073,791 - Psest_0991 0.22 -2.5
1,073,852 + Psest_0991 0.28 +0.1
1,073,853 - Psest_0991 0.28 -0.5
1,073,956 - Psest_0991 0.39 -0.1
1,073,956 - Psest_0991 0.39 -1.5
1,074,101 - Psest_0991 0.53 -1.9
1,074,101 - Psest_0991 0.53 -0.4
1,074,102 + Psest_0991 0.53 -0.6
1,074,102 + Psest_0991 0.53 -0.9
1,074,102 + Psest_0991 0.53 -1.0
1,074,127 + Psest_0991 0.55 -0.5
1,074,212 + Psest_0991 0.64 -2.8
1,074,327 + Psest_0991 0.75 -2.0
1,074,598 + +0.9
1,074,648 - -2.0
1,074,883 + Psest_0992 0.27 -2.1
1,074,883 + Psest_0992 0.27 -0.6
1,074,893 - Psest_0992 0.28 -1.1
1,074,893 - Psest_0992 0.28 -0.2
1,074,893 - Psest_0992 0.28 +3.7
1,074,945 - Psest_0992 0.34 -0.0
1,074,945 - Psest_0992 0.34 -0.2
1,075,019 + Psest_0992 0.43 -1.1
1,075,019 + Psest_0992 0.43 -1.1
1,075,022 + Psest_0992 0.43 -0.9
1,075,023 - Psest_0992 0.43 -0.4
1,075,448 + +0.7
1,075,555 + +0.8
1,075,558 + +0.9
1,075,558 + -1.6
1,075,558 + -0.9
1,075,558 + +1.3
1,075,558 + -0.2
1,075,559 - +0.6
1,075,559 - +0.6

Or see this region's nucleotide sequence