Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4119

Experiment: Ionizing radiation, 319.06 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4115 and Psest_4116 are separated by 15 nucleotidesPsest_4116 and Psest_4117 overlap by 4 nucleotidesPsest_4117 and Psest_4118 are separated by 10 nucleotidesPsest_4118 and Psest_4119 are separated by 151 nucleotidesPsest_4119 and Psest_4120 overlap by 1 nucleotidesPsest_4120 and Psest_4121 are separated by 12 nucleotides Psest_4115: Psest_4115 - hypothetical protein, at 4,297,106 to 4,297,477 _4115 Psest_4116: Psest_4116 - hypothetical protein, at 4,297,493 to 4,297,672 _4116 Psest_4117: Psest_4117 - hypothetical protein, at 4,297,669 to 4,297,884 _4117 Psest_4118: Psest_4118 - Bacteriophage coat protein B., at 4,297,895 to 4,298,104 _4118 Psest_4119: Psest_4119 - hypothetical protein, at 4,298,256 to 4,299,749 _4119 Psest_4120: Psest_4120 - Protein of unknown function (DUF2523)., at 4,299,749 to 4,300,075 _4120 Psest_4121: Psest_4121 - Zonula occludens toxin, at 4,300,088 to 4,301,272 _4121 Position (kb) 4298 4299 4300Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4298.084 kb on + strandat 4298.084 kb on + strandat 4298.084 kb on + strandat 4298.084 kb on + strandat 4298.084 kb on + strandat 4298.189 kb on - strandat 4298.189 kb on - strandat 4298.198 kb on - strandat 4298.198 kb on - strandat 4298.255 kb on + strandat 4298.587 kb on - strand, within Psest_4119at 4298.587 kb on - strand, within Psest_4119at 4298.664 kb on + strand, within Psest_4119at 4298.664 kb on + strand, within Psest_4119at 4298.664 kb on + strand, within Psest_4119at 4298.664 kb on + strand, within Psest_4119at 4298.739 kb on + strand, within Psest_4119at 4298.739 kb on + strand, within Psest_4119at 4298.739 kb on + strand, within Psest_4119at 4298.740 kb on - strand, within Psest_4119at 4298.740 kb on - strand, within Psest_4119at 4298.814 kb on + strand, within Psest_4119at 4298.829 kb on + strand, within Psest_4119at 4299.098 kb on + strand, within Psest_4119at 4299.203 kb on + strand, within Psest_4119at 4299.296 kb on + strand, within Psest_4119at 4299.296 kb on + strand, within Psest_4119at 4299.296 kb on + strand, within Psest_4119at 4299.395 kb on + strand, within Psest_4119at 4300.185 kb on - strandat 4300.185 kb on - strandat 4300.185 kb on - strandat 4300.418 kb on + strand, within Psest_4121at 4300.448 kb on - strand, within Psest_4121at 4300.599 kb on - strand, within Psest_4121

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 319.06 Gy,
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4,298,084 + +0.6
4,298,084 + -1.7
4,298,084 + +1.4
4,298,084 + +0.7
4,298,084 + -3.2
4,298,189 - +1.2
4,298,189 - +0.6
4,298,198 - +1.3
4,298,198 - -0.2
4,298,255 + +0.0
4,298,587 - Psest_4119 0.22 -2.5
4,298,587 - Psest_4119 0.22 +0.2
4,298,664 + Psest_4119 0.27 +2.6
4,298,664 + Psest_4119 0.27 +1.1
4,298,664 + Psest_4119 0.27 -0.2
4,298,664 + Psest_4119 0.27 -2.5
4,298,739 + Psest_4119 0.32 +0.9
4,298,739 + Psest_4119 0.32 +0.9
4,298,739 + Psest_4119 0.32 +0.9
4,298,740 - Psest_4119 0.32 +2.3
4,298,740 - Psest_4119 0.32 +0.9
4,298,814 + Psest_4119 0.37 +1.2
4,298,829 + Psest_4119 0.38 -1.6
4,299,098 + Psest_4119 0.56 +0.9
4,299,203 + Psest_4119 0.63 +1.6
4,299,296 + Psest_4119 0.70 -0.1
4,299,296 + Psest_4119 0.70 +0.2
4,299,296 + Psest_4119 0.70 -0.1
4,299,395 + Psest_4119 0.76 +0.3
4,300,185 - +2.5
4,300,185 - +0.3
4,300,185 - -0.9
4,300,418 + Psest_4121 0.28 -0.6
4,300,448 - Psest_4121 0.30 -0.1
4,300,599 - Psest_4121 0.43 -1.0

Or see this region's nucleotide sequence