Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3397

Experiment: Ionizing radiation, 319.06 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3396 and Psest_3397 are separated by 279 nucleotidesPsest_3397 and Psest_3398 are separated by 63 nucleotidesPsest_3398 and Psest_3399 are separated by 223 nucleotides Psest_3396: Psest_3396 - Predicted ATP-dependent protease, at 3,563,480 to 3,565,921 _3396 Psest_3397: Psest_3397 - Cytochrome c peroxidase, at 3,566,201 to 3,567,229 _3397 Psest_3398: Psest_3398 - large conductance mechanosensitive channel protein, at 3,567,293 to 3,567,703 _3398 Psest_3399: Psest_3399 - Uncharacterized protein conserved in bacteria, at 3,567,927 to 3,568,196 _3399 Position (kb) 3566 3567 3568Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3565.639 kb on - strand, within Psest_3396at 3565.639 kb on - strand, within Psest_3396at 3565.695 kb on - strandat 3565.734 kb on + strandat 3565.734 kb on + strandat 3565.734 kb on + strandat 3565.734 kb on + strandat 3565.735 kb on - strandat 3565.735 kb on - strandat 3565.735 kb on - strandat 3565.735 kb on - strandat 3565.735 kb on - strandat 3565.735 kb on - strandat 3565.735 kb on - strandat 3565.743 kb on + strandat 3565.743 kb on + strandat 3565.744 kb on - strandat 3566.095 kb on - strandat 3566.155 kb on + strandat 3566.156 kb on - strandat 3566.168 kb on + strandat 3566.168 kb on + strandat 3566.169 kb on - strandat 3566.194 kb on + strandat 3566.195 kb on - strandat 3566.195 kb on - strandat 3566.195 kb on - strandat 3566.195 kb on - strandat 3566.195 kb on - strandat 3566.195 kb on - strandat 3566.195 kb on - strandat 3566.195 kb on - strandat 3566.198 kb on + strandat 3566.198 kb on + strandat 3566.198 kb on + strandat 3566.198 kb on + strandat 3566.198 kb on + strandat 3566.198 kb on + strandat 3566.198 kb on + strandat 3566.199 kb on - strandat 3566.199 kb on - strandat 3566.199 kb on - strandat 3566.199 kb on - strandat 3566.199 kb on - strandat 3566.199 kb on - strandat 3566.199 kb on - strandat 3566.220 kb on + strandat 3566.220 kb on + strandat 3566.235 kb on + strandat 3566.236 kb on - strandat 3566.236 kb on - strandat 3566.238 kb on + strandat 3566.238 kb on + strandat 3566.238 kb on + strandat 3566.238 kb on + strandat 3566.239 kb on - strandat 3566.239 kb on - strandat 3566.242 kb on + strandat 3566.243 kb on - strandat 3566.655 kb on - strand, within Psest_3397at 3566.720 kb on + strand, within Psest_3397at 3566.720 kb on + strand, within Psest_3397at 3566.721 kb on - strand, within Psest_3397at 3566.758 kb on + strand, within Psest_3397at 3566.758 kb on + strand, within Psest_3397at 3566.758 kb on + strand, within Psest_3397at 3566.758 kb on + strand, within Psest_3397at 3566.758 kb on + strand, within Psest_3397at 3566.758 kb on + strand, within Psest_3397at 3566.758 kb on + strand, within Psest_3397at 3566.758 kb on + strand, within Psest_3397at 3566.758 kb on + strand, within Psest_3397at 3566.759 kb on - strand, within Psest_3397at 3566.759 kb on - strand, within Psest_3397at 3566.759 kb on - strand, within Psest_3397at 3566.871 kb on + strand, within Psest_3397at 3566.871 kb on + strand, within Psest_3397at 3566.871 kb on + strand, within Psest_3397at 3566.871 kb on + strand, within Psest_3397at 3566.871 kb on + strand, within Psest_3397at 3566.871 kb on + strand, within Psest_3397at 3566.871 kb on + strand, within Psest_3397at 3566.871 kb on + strand, within Psest_3397at 3566.872 kb on - strand, within Psest_3397at 3566.892 kb on - strand, within Psest_3397at 3566.988 kb on - strand, within Psest_3397at 3566.988 kb on - strand, within Psest_3397at 3566.988 kb on - strand, within Psest_3397at 3566.988 kb on - strand, within Psest_3397at 3567.035 kb on + strand, within Psest_3397at 3567.035 kb on + strand, within Psest_3397at 3567.035 kb on + strand, within Psest_3397at 3567.036 kb on - strand, within Psest_3397at 3567.036 kb on - strand, within Psest_3397at 3567.233 kb on + strandat 3567.233 kb on + strandat 3567.233 kb on + strandat 3567.234 kb on - strandat 3567.282 kb on + strandat 3567.467 kb on + strand, within Psest_3398at 3567.467 kb on + strand, within Psest_3398at 3567.468 kb on - strand, within Psest_3398at 3567.468 kb on - strand, within Psest_3398at 3567.524 kb on + strand, within Psest_3398at 3567.524 kb on + strand, within Psest_3398at 3567.525 kb on - strand, within Psest_3398at 3567.559 kb on + strand, within Psest_3398at 3567.703 kb on + strandat 3567.703 kb on + strandat 3567.703 kb on + strandat 3567.704 kb on - strandat 3567.704 kb on - strandat 3567.704 kb on - strandat 3567.776 kb on + strandat 3567.777 kb on - strandat 3567.889 kb on + strandat 3567.889 kb on + strandat 3567.894 kb on + strandat 3567.894 kb on + strandat 3567.894 kb on + strandat 3567.895 kb on - strandat 3568.032 kb on + strand, within Psest_3399at 3568.033 kb on - strand, within Psest_3399

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 319.06 Gy,
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3,565,639 - Psest_3396 0.88 +0.9
3,565,639 - Psest_3396 0.88 +1.8
3,565,695 - +0.6
3,565,734 + +1.0
3,565,734 + -0.6
3,565,734 + +1.8
3,565,734 + -0.2
3,565,735 - +0.2
3,565,735 - -0.2
3,565,735 - +2.2
3,565,735 - -0.8
3,565,735 - -0.4
3,565,735 - +1.1
3,565,735 - +1.9
3,565,743 + -0.1
3,565,743 + +0.9
3,565,744 - +2.6
3,566,095 - +0.2
3,566,155 + +1.5
3,566,156 - -0.3
3,566,168 + +0.2
3,566,168 + -0.9
3,566,169 - -0.4
3,566,194 + -0.0
3,566,195 - -0.2
3,566,195 - -0.0
3,566,195 - +2.3
3,566,195 - -0.1
3,566,195 - +0.3
3,566,195 - +0.1
3,566,195 - +0.1
3,566,195 - -0.1
3,566,198 + +1.0
3,566,198 + -2.4
3,566,198 + +1.1
3,566,198 + +0.4
3,566,198 + -0.9
3,566,198 + +3.5
3,566,198 + +1.2
3,566,199 - -2.1
3,566,199 - -0.1
3,566,199 - +0.3
3,566,199 - +0.1
3,566,199 - -0.3
3,566,199 - -1.4
3,566,199 - -1.5
3,566,220 + -0.0
3,566,220 + +1.4
3,566,235 + -0.2
3,566,236 - +0.8
3,566,236 - +0.7
3,566,238 + +0.4
3,566,238 + +0.6
3,566,238 + +0.2
3,566,238 + +2.2
3,566,239 - -0.1
3,566,239 - +1.4
3,566,242 + +0.6
3,566,243 - +0.1
3,566,655 - Psest_3397 0.44 +1.3
3,566,720 + Psest_3397 0.50 +0.5
3,566,720 + Psest_3397 0.50 -2.6
3,566,721 - Psest_3397 0.51 +0.8
3,566,758 + Psest_3397 0.54 +0.5
3,566,758 + Psest_3397 0.54 +0.8
3,566,758 + Psest_3397 0.54 -0.2
3,566,758 + Psest_3397 0.54 -1.1
3,566,758 + Psest_3397 0.54 -1.9
3,566,758 + Psest_3397 0.54 +0.9
3,566,758 + Psest_3397 0.54 +0.9
3,566,758 + Psest_3397 0.54 +2.3
3,566,758 + Psest_3397 0.54 -1.2
3,566,759 - Psest_3397 0.54 +1.1
3,566,759 - Psest_3397 0.54 -0.1
3,566,759 - Psest_3397 0.54 +0.1
3,566,871 + Psest_3397 0.65 +1.8
3,566,871 + Psest_3397 0.65 +0.3
3,566,871 + Psest_3397 0.65 +0.4
3,566,871 + Psest_3397 0.65 +0.5
3,566,871 + Psest_3397 0.65 -1.6
3,566,871 + Psest_3397 0.65 -0.1
3,566,871 + Psest_3397 0.65 -0.3
3,566,871 + Psest_3397 0.65 -3.1
3,566,872 - Psest_3397 0.65 -0.2
3,566,892 - Psest_3397 0.67 +0.9
3,566,988 - Psest_3397 0.76 -1.5
3,566,988 - Psest_3397 0.76 +0.4
3,566,988 - Psest_3397 0.76 +0.5
3,566,988 - Psest_3397 0.76 -1.2
3,567,035 + Psest_3397 0.81 +2.4
3,567,035 + Psest_3397 0.81 -0.0
3,567,035 + Psest_3397 0.81 +0.7
3,567,036 - Psest_3397 0.81 +0.6
3,567,036 - Psest_3397 0.81 +0.1
3,567,233 + -0.1
3,567,233 + -1.1
3,567,233 + -0.9
3,567,234 - -0.6
3,567,282 + +0.4
3,567,467 + Psest_3398 0.42 +0.5
3,567,467 + Psest_3398 0.42 -0.9
3,567,468 - Psest_3398 0.43 +0.4
3,567,468 - Psest_3398 0.43 -1.3
3,567,524 + Psest_3398 0.56 +1.7
3,567,524 + Psest_3398 0.56 -1.9
3,567,525 - Psest_3398 0.56 -1.5
3,567,559 + Psest_3398 0.65 -0.6
3,567,703 + -0.4
3,567,703 + -0.9
3,567,703 + +0.3
3,567,704 - -0.6
3,567,704 - +0.5
3,567,704 - +1.9
3,567,776 + +0.9
3,567,777 - -1.4
3,567,889 + -1.6
3,567,889 + +1.4
3,567,894 + +1.1
3,567,894 + -1.1
3,567,894 + +0.3
3,567,895 - +1.3
3,568,032 + Psest_3399 0.39 -0.6
3,568,033 - Psest_3399 0.39 +0.1

Or see this region's nucleotide sequence