Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2183

Experiment: Ionizing radiation, 319.06 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2181 and Psest_2182 are separated by 175 nucleotidesPsest_2182 and Psest_2183 are separated by 217 nucleotidesPsest_2183 and Psest_2184 are separated by 19 nucleotides Psest_2181: Psest_2181 - Protein of unknown function (DUF1615)., at 2,338,175 to 2,339,341 _2181 Psest_2182: Psest_2182 - Protein of unknown function (DUF2790)., at 2,339,517 to 2,339,819 _2182 Psest_2183: Psest_2183 - Transcriptional regulator, at 2,340,037 to 2,340,972 _2183 Psest_2184: Psest_2184 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,340,992 to 2,342,464 _2184 Position (kb) 2340 2341Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2339.097 kb on + strand, within Psest_2181at 2339.097 kb on + strand, within Psest_2181at 2339.097 kb on + strand, within Psest_2181at 2339.097 kb on + strand, within Psest_2181at 2339.098 kb on - strand, within Psest_2181at 2339.098 kb on - strand, within Psest_2181at 2339.098 kb on - strand, within Psest_2181at 2339.098 kb on - strand, within Psest_2181at 2339.380 kb on + strandat 2339.380 kb on + strandat 2339.381 kb on - strandat 2339.551 kb on + strand, within Psest_2182at 2339.552 kb on - strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strandat 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.587 kb on + strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.588 kb on - strand, within Psest_2182at 2339.628 kb on + strand, within Psest_2182at 2339.628 kb on + strand, within Psest_2182at 2339.628 kb on + strand, within Psest_2182at 2339.628 kb on + strand, within Psest_2182at 2339.628 kb on + strand, within Psest_2182at 2339.629 kb on - strand, within Psest_2182at 2339.629 kb on - strand, within Psest_2182at 2339.671 kb on + strand, within Psest_2182at 2339.672 kb on - strand, within Psest_2182at 2339.677 kb on + strand, within Psest_2182at 2339.702 kb on - strand, within Psest_2182at 2339.757 kb on + strand, within Psest_2182at 2339.757 kb on + strand, within Psest_2182at 2339.758 kb on - strand, within Psest_2182at 2339.852 kb on + strandat 2339.852 kb on + strandat 2339.852 kb on + strandat 2339.943 kb on - strandat 2340.245 kb on + strand, within Psest_2183at 2340.245 kb on + strand, within Psest_2183at 2340.245 kb on + strand, within Psest_2183at 2340.245 kb on + strand, within Psest_2183at 2340.245 kb on + strand, within Psest_2183at 2340.245 kb on + strand, within Psest_2183at 2340.632 kb on + strand, within Psest_2183at 2340.633 kb on - strand, within Psest_2183at 2340.633 kb on - strand, within Psest_2183at 2340.678 kb on + strand, within Psest_2183at 2340.679 kb on - strand, within Psest_2183at 2340.978 kb on - strandat 2341.194 kb on + strand, within Psest_2184at 2341.279 kb on - strand, within Psest_2184at 2341.710 kb on + strand, within Psest_2184at 2341.710 kb on + strand, within Psest_2184at 2341.710 kb on + strand, within Psest_2184at 2341.711 kb on - strand, within Psest_2184at 2341.911 kb on + strand, within Psest_2184at 2341.911 kb on + strand, within Psest_2184at 2341.911 kb on + strand, within Psest_2184at 2341.911 kb on + strand, within Psest_2184at 2341.911 kb on + strand, within Psest_2184at 2341.911 kb on + strand, within Psest_2184at 2341.911 kb on + strand, within Psest_2184at 2341.911 kb on + strand, within Psest_2184at 2341.912 kb on - strand, within Psest_2184at 2341.912 kb on - strand, within Psest_2184at 2341.912 kb on - strand, within Psest_2184at 2341.912 kb on - strand, within Psest_2184at 2341.912 kb on - strand, within Psest_2184at 2341.912 kb on - strand, within Psest_2184at 2341.920 kb on - strand, within Psest_2184at 2341.941 kb on - strand, within Psest_2184

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 319.06 Gy,
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2,339,097 + Psest_2181 0.79 +0.3
2,339,097 + Psest_2181 0.79 +1.3
2,339,097 + Psest_2181 0.79 +0.5
2,339,097 + Psest_2181 0.79 +0.3
2,339,098 - Psest_2181 0.79 +1.4
2,339,098 - Psest_2181 0.79 +1.0
2,339,098 - Psest_2181 0.79 -1.8
2,339,098 - Psest_2181 0.79 -1.5
2,339,380 + +1.4
2,339,380 + -0.5
2,339,381 - -1.0
2,339,551 + Psest_2182 0.11 +0.6
2,339,552 - Psest_2182 0.12 -2.5
2,339,587 + Psest_2182 0.23 -0.8
2,339,587 + Psest_2182 0.23 +1.2
2,339,587 + Psest_2182 0.23 +1.5
2,339,587 + Psest_2182 0.23 -0.4
2,339,587 + -1.8
2,339,587 + Psest_2182 0.23 -2.3
2,339,587 + Psest_2182 0.23 +1.7
2,339,587 + Psest_2182 0.23 -1.8
2,339,587 + Psest_2182 0.23 -0.1
2,339,587 + Psest_2182 0.23 +0.5
2,339,587 + Psest_2182 0.23 +0.5
2,339,587 + Psest_2182 0.23 -0.1
2,339,588 - Psest_2182 0.23 +2.3
2,339,588 - Psest_2182 0.23 -0.2
2,339,588 - Psest_2182 0.23 +0.5
2,339,588 - Psest_2182 0.23 -0.3
2,339,588 - Psest_2182 0.23 -0.8
2,339,588 - Psest_2182 0.23 +0.0
2,339,588 - Psest_2182 0.23 -0.1
2,339,588 - Psest_2182 0.23 -1.2
2,339,588 - Psest_2182 0.23 +1.5
2,339,588 - Psest_2182 0.23 +1.0
2,339,588 - Psest_2182 0.23 -0.2
2,339,628 + Psest_2182 0.37 +2.4
2,339,628 + Psest_2182 0.37 +0.8
2,339,628 + Psest_2182 0.37 +0.6
2,339,628 + Psest_2182 0.37 -0.8
2,339,628 + Psest_2182 0.37 -0.2
2,339,629 - Psest_2182 0.37 +1.0
2,339,629 - Psest_2182 0.37 -0.8
2,339,671 + Psest_2182 0.51 +0.4
2,339,672 - Psest_2182 0.51 +0.2
2,339,677 + Psest_2182 0.53 -0.5
2,339,702 - Psest_2182 0.61 -0.0
2,339,757 + Psest_2182 0.79 +0.3
2,339,757 + Psest_2182 0.79 -0.7
2,339,758 - Psest_2182 0.80 +1.3
2,339,852 + +2.0
2,339,852 + +0.3
2,339,852 + +1.4
2,339,943 - +2.2
2,340,245 + Psest_2183 0.22 -3.0
2,340,245 + Psest_2183 0.22 -1.1
2,340,245 + Psest_2183 0.22 -1.5
2,340,245 + Psest_2183 0.22 -1.5
2,340,245 + Psest_2183 0.22 -2.1
2,340,245 + Psest_2183 0.22 -0.7
2,340,632 + Psest_2183 0.64 +1.5
2,340,633 - Psest_2183 0.64 +0.7
2,340,633 - Psest_2183 0.64 -1.5
2,340,678 + Psest_2183 0.68 +0.5
2,340,679 - Psest_2183 0.69 -1.3
2,340,978 - -1.4
2,341,194 + Psest_2184 0.14 +0.7
2,341,279 - Psest_2184 0.19 +0.9
2,341,710 + Psest_2184 0.49 -1.3
2,341,710 + Psest_2184 0.49 -2.0
2,341,710 + Psest_2184 0.49 +1.0
2,341,711 - Psest_2184 0.49 +0.5
2,341,911 + Psest_2184 0.62 -1.8
2,341,911 + Psest_2184 0.62 +1.7
2,341,911 + Psest_2184 0.62 +0.1
2,341,911 + Psest_2184 0.62 +1.5
2,341,911 + Psest_2184 0.62 -0.2
2,341,911 + Psest_2184 0.62 -0.6
2,341,911 + Psest_2184 0.62 +0.0
2,341,911 + Psest_2184 0.62 +1.0
2,341,912 - Psest_2184 0.62 +1.2
2,341,912 - Psest_2184 0.62 +0.4
2,341,912 - Psest_2184 0.62 -0.1
2,341,912 - Psest_2184 0.62 -1.5
2,341,912 - Psest_2184 0.62 -0.4
2,341,912 - Psest_2184 0.62 -2.0
2,341,920 - Psest_2184 0.63 +1.1
2,341,941 - Psest_2184 0.64 -0.8

Or see this region's nucleotide sequence