Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2166

Experiment: Ionizing radiation, 319.06 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2164 and Psest_2165 are separated by 27 nucleotidesPsest_2165 and Psest_2166 are separated by 16 nucleotidesPsest_2166 and Psest_2167 are separated by 279 nucleotides Psest_2164: Psest_2164 - Uncharacterized conserved protein, at 2,316,736 to 2,317,560 _2164 Psest_2165: Psest_2165 - Cytochrome B561, at 2,317,588 to 2,318,427 _2165 Psest_2166: Psest_2166 - Membrane proteins related to metalloendopeptidases, at 2,318,444 to 2,319,292 _2166 Psest_2167: Psest_2167 - glycogen debranching enzyme GlgX, at 2,319,572 to 2,321,722 _2167 Position (kb) 2318 2319 2320Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2317.591 kb on + strandat 2317.591 kb on + strandat 2317.889 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.186 kb on - strand, within Psest_2165at 2318.225 kb on - strand, within Psest_2165at 2318.273 kb on + strand, within Psest_2165at 2318.567 kb on - strand, within Psest_2166at 2318.697 kb on + strand, within Psest_2166at 2318.697 kb on + strand, within Psest_2166at 2318.697 kb on + strand, within Psest_2166at 2318.697 kb on + strand, within Psest_2166at 2318.697 kb on + strand, within Psest_2166at 2318.698 kb on - strand, within Psest_2166at 2318.698 kb on - strand, within Psest_2166at 2318.698 kb on - strand, within Psest_2166at 2318.698 kb on - strand, within Psest_2166at 2318.863 kb on + strand, within Psest_2166at 2318.863 kb on + strand, within Psest_2166at 2318.864 kb on - strand, within Psest_2166at 2318.895 kb on + strand, within Psest_2166at 2318.941 kb on - strand, within Psest_2166at 2318.952 kb on + strand, within Psest_2166at 2318.952 kb on + strand, within Psest_2166at 2318.953 kb on - strand, within Psest_2166at 2319.211 kb on + strandat 2319.267 kb on + strandat 2319.271 kb on + strandat 2319.272 kb on - strandat 2319.272 kb on - strandat 2319.696 kb on + strandat 2319.696 kb on + strandat 2319.696 kb on + strandat 2319.697 kb on - strandat 2319.697 kb on - strandat 2319.701 kb on - strandat 2319.701 kb on - strandat 2320.014 kb on + strand, within Psest_2167at 2320.015 kb on - strand, within Psest_2167at 2320.069 kb on - strand, within Psest_2167at 2320.069 kb on - strand, within Psest_2167at 2320.069 kb on - strand, within Psest_2167at 2320.094 kb on - strand, within Psest_2167

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 319.06 Gy,
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2,317,591 + -0.4
2,317,591 + +0.6
2,317,889 + Psest_2165 0.36 -3.7
2,318,185 + Psest_2165 0.71 +1.1
2,318,185 + Psest_2165 0.71 -0.6
2,318,185 + Psest_2165 0.71 -0.3
2,318,185 + Psest_2165 0.71 -0.2
2,318,185 + Psest_2165 0.71 -0.4
2,318,186 - Psest_2165 0.71 +0.5
2,318,225 - Psest_2165 0.76 -0.4
2,318,273 + Psest_2165 0.82 +2.1
2,318,567 - Psest_2166 0.14 -0.4
2,318,697 + Psest_2166 0.30 -2.6
2,318,697 + Psest_2166 0.30 +1.5
2,318,697 + Psest_2166 0.30 -1.2
2,318,697 + Psest_2166 0.30 -0.5
2,318,697 + Psest_2166 0.30 -1.3
2,318,698 - Psest_2166 0.30 -0.6
2,318,698 - Psest_2166 0.30 -0.5
2,318,698 - Psest_2166 0.30 -0.9
2,318,698 - Psest_2166 0.30 +1.1
2,318,863 + Psest_2166 0.49 -0.3
2,318,863 + Psest_2166 0.49 -1.6
2,318,864 - Psest_2166 0.49 -1.3
2,318,895 + Psest_2166 0.53 +0.7
2,318,941 - Psest_2166 0.59 -0.2
2,318,952 + Psest_2166 0.60 -0.5
2,318,952 + Psest_2166 0.60 +0.6
2,318,953 - Psest_2166 0.60 -0.0
2,319,211 + +1.0
2,319,267 + +0.1
2,319,271 + -2.4
2,319,272 - -0.5
2,319,272 - +0.2
2,319,696 + +0.6
2,319,696 + -0.8
2,319,696 + -0.5
2,319,697 - -0.2
2,319,697 - -0.4
2,319,701 - -1.5
2,319,701 - +0.1
2,320,014 + Psest_2167 0.21 -0.1
2,320,015 - Psest_2167 0.21 +0.1
2,320,069 - Psest_2167 0.23 -1.8
2,320,069 - Psest_2167 0.23 +0.7
2,320,069 - Psest_2167 0.23 +1.1
2,320,094 - Psest_2167 0.24 +0.1

Or see this region's nucleotide sequence