Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2068

Experiment: Ionizing radiation, 319.06 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2067 and Psest_2068 overlap by 4 nucleotidesPsest_2068 and Psest_2069 are separated by 115 nucleotides Psest_2067: Psest_2067 - ABC-type oligopeptide transport system, periplasmic component, at 2,193,344 to 2,195,230 _2067 Psest_2068: Psest_2068 - ABC-type oligopeptide transport system, periplasmic component, at 2,195,227 to 2,197,056 _2068 Psest_2069: Psest_2069 - HDOD domain., at 2,197,172 to 2,198,647 _2069 Position (kb) 2195 2196 2197 2198Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2194.305 kb on + strand, within Psest_2067at 2194.753 kb on - strand, within Psest_2067at 2194.880 kb on - strand, within Psest_2067at 2195.277 kb on + strandat 2195.278 kb on - strandat 2195.280 kb on - strandat 2195.520 kb on - strand, within Psest_2068at 2195.520 kb on - strand, within Psest_2068at 2195.586 kb on - strand, within Psest_2068at 2195.606 kb on + strand, within Psest_2068at 2195.606 kb on + strand, within Psest_2068at 2195.957 kb on + strand, within Psest_2068at 2195.958 kb on - strand, within Psest_2068at 2195.958 kb on - strand, within Psest_2068at 2195.958 kb on - strand, within Psest_2068at 2195.958 kb on - strand, within Psest_2068at 2195.958 kb on - strand, within Psest_2068at 2195.984 kb on + strand, within Psest_2068at 2195.985 kb on - strand, within Psest_2068at 2195.985 kb on - strand, within Psest_2068at 2195.985 kb on - strand, within Psest_2068at 2195.985 kb on - strand, within Psest_2068at 2195.985 kb on - strand, within Psest_2068at 2196.198 kb on - strand, within Psest_2068at 2196.198 kb on - strand, within Psest_2068at 2196.198 kb on - strand, within Psest_2068at 2196.198 kb on - strand, within Psest_2068at 2196.198 kb on - strand, within Psest_2068at 2196.282 kb on - strand, within Psest_2068at 2196.282 kb on - strand, within Psest_2068at 2196.282 kb on - strand, within Psest_2068at 2196.282 kb on - strand, within Psest_2068at 2196.358 kb on + strand, within Psest_2068at 2196.359 kb on - strand, within Psest_2068at 2196.435 kb on - strand, within Psest_2068at 2196.455 kb on - strand, within Psest_2068at 2196.696 kb on - strand, within Psest_2068at 2196.756 kb on - strand, within Psest_2068at 2196.756 kb on - strand, within Psest_2068at 2196.850 kb on - strand, within Psest_2068at 2196.850 kb on - strand, within Psest_2068at 2196.958 kb on - strandat 2196.958 kb on - strandat 2196.958 kb on - strandat 2196.958 kb on - strandat 2196.958 kb on - strandat 2196.958 kb on - strandat 2196.958 kb on - strandat 2197.037 kb on - strandat 2197.109 kb on - strandat 2197.119 kb on - strandat 2197.119 kb on - strandat 2197.203 kb on + strandat 2197.204 kb on - strandat 2197.204 kb on - strandat 2197.299 kb on + strandat 2197.318 kb on - strandat 2197.338 kb on + strand, within Psest_2069at 2197.338 kb on + strand, within Psest_2069at 2197.387 kb on + strand, within Psest_2069at 2197.388 kb on - strand, within Psest_2069at 2197.388 kb on - strand, within Psest_2069at 2197.391 kb on + strand, within Psest_2069at 2197.391 kb on + strand, within Psest_2069at 2197.391 kb on + strand, within Psest_2069at 2197.391 kb on + strand, within Psest_2069at 2197.392 kb on - strand, within Psest_2069at 2197.392 kb on - strand, within Psest_2069at 2197.394 kb on + strand, within Psest_2069at 2197.394 kb on + strand, within Psest_2069at 2197.394 kb on + strand, within Psest_2069at 2197.394 kb on + strand, within Psest_2069at 2197.394 kb on + strand, within Psest_2069at 2197.394 kb on + strand, within Psest_2069at 2197.394 kb on + strand, within Psest_2069at 2197.394 kb on + strand, within Psest_2069at 2197.394 kb on + strand, within Psest_2069at 2197.394 kb on + strand, within Psest_2069at 2197.394 kb on + strand, within Psest_2069at 2197.395 kb on - strand, within Psest_2069at 2197.395 kb on - strand, within Psest_2069at 2197.395 kb on - strand, within Psest_2069at 2197.395 kb on - strand, within Psest_2069at 2197.395 kb on - strand, within Psest_2069at 2197.395 kb on - strand, within Psest_2069at 2197.395 kb on - strand, within Psest_2069at 2197.395 kb on - strand, within Psest_2069at 2197.634 kb on + strand, within Psest_2069at 2197.634 kb on + strand, within Psest_2069at 2197.634 kb on + strand, within Psest_2069at 2197.634 kb on + strand, within Psest_2069at 2197.634 kb on + strand, within Psest_2069at 2197.635 kb on - strand, within Psest_2069at 2197.635 kb on - strand, within Psest_2069at 2197.635 kb on - strand, within Psest_2069at 2197.822 kb on + strand, within Psest_2069at 2197.957 kb on - strand, within Psest_2069at 2197.957 kb on - strand, within Psest_2069at 2198.032 kb on + strand, within Psest_2069

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 319.06 Gy,
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2,194,305 + Psest_2067 0.51 +0.1
2,194,753 - Psest_2067 0.75 +1.1
2,194,880 - Psest_2067 0.81 +0.1
2,195,277 + -2.3
2,195,278 - -0.5
2,195,280 - -0.5
2,195,520 - Psest_2068 0.16 -0.5
2,195,520 - Psest_2068 0.16 -0.1
2,195,586 - Psest_2068 0.20 +0.6
2,195,606 + Psest_2068 0.21 +0.1
2,195,606 + Psest_2068 0.21 -0.9
2,195,957 + Psest_2068 0.40 +1.1
2,195,958 - Psest_2068 0.40 -1.2
2,195,958 - Psest_2068 0.40 +2.6
2,195,958 - Psest_2068 0.40 +0.1
2,195,958 - Psest_2068 0.40 -2.4
2,195,958 - Psest_2068 0.40 +0.7
2,195,984 + Psest_2068 0.41 -2.6
2,195,985 - Psest_2068 0.41 +0.0
2,195,985 - Psest_2068 0.41 +1.8
2,195,985 - Psest_2068 0.41 -0.7
2,195,985 - Psest_2068 0.41 -0.0
2,195,985 - Psest_2068 0.41 +0.2
2,196,198 - Psest_2068 0.53 +0.1
2,196,198 - Psest_2068 0.53 +0.6
2,196,198 - Psest_2068 0.53 +0.1
2,196,198 - Psest_2068 0.53 +0.7
2,196,198 - Psest_2068 0.53 +1.2
2,196,282 - Psest_2068 0.58 -2.1
2,196,282 - Psest_2068 0.58 +2.2
2,196,282 - Psest_2068 0.58 -1.1
2,196,282 - Psest_2068 0.58 +0.7
2,196,358 + Psest_2068 0.62 +0.3
2,196,359 - Psest_2068 0.62 -0.5
2,196,435 - Psest_2068 0.66 -0.5
2,196,455 - Psest_2068 0.67 -0.3
2,196,696 - Psest_2068 0.80 +1.5
2,196,756 - Psest_2068 0.84 +0.8
2,196,756 - Psest_2068 0.84 +0.4
2,196,850 - Psest_2068 0.89 +0.1
2,196,850 - Psest_2068 0.89 +0.4
2,196,958 - +0.4
2,196,958 - -0.2
2,196,958 - -1.6
2,196,958 - +1.6
2,196,958 - -0.5
2,196,958 - -0.2
2,196,958 - -0.8
2,197,037 - -1.6
2,197,109 - +0.1
2,197,119 - +0.5
2,197,119 - +1.4
2,197,203 + +0.3
2,197,204 - -1.9
2,197,204 - +0.9
2,197,299 + -1.3
2,197,318 - +0.4
2,197,338 + Psest_2069 0.11 +0.7
2,197,338 + Psest_2069 0.11 +0.4
2,197,387 + Psest_2069 0.15 -0.0
2,197,388 - Psest_2069 0.15 +2.4
2,197,388 - Psest_2069 0.15 +0.7
2,197,391 + Psest_2069 0.15 +0.4
2,197,391 + Psest_2069 0.15 -0.4
2,197,391 + Psest_2069 0.15 +1.1
2,197,391 + Psest_2069 0.15 +3.9
2,197,392 - Psest_2069 0.15 +0.2
2,197,392 - Psest_2069 0.15 -2.1
2,197,394 + Psest_2069 0.15 -0.8
2,197,394 + Psest_2069 0.15 +0.8
2,197,394 + Psest_2069 0.15 +0.6
2,197,394 + Psest_2069 0.15 -0.2
2,197,394 + Psest_2069 0.15 -1.5
2,197,394 + Psest_2069 0.15 +1.5
2,197,394 + Psest_2069 0.15 -2.8
2,197,394 + Psest_2069 0.15 -0.8
2,197,394 + Psest_2069 0.15 +0.4
2,197,394 + Psest_2069 0.15 +3.4
2,197,394 + Psest_2069 0.15 -0.3
2,197,395 - Psest_2069 0.15 +0.3
2,197,395 - Psest_2069 0.15 +0.5
2,197,395 - Psest_2069 0.15 +0.5
2,197,395 - Psest_2069 0.15 -1.5
2,197,395 - Psest_2069 0.15 +3.1
2,197,395 - Psest_2069 0.15 -1.7
2,197,395 - Psest_2069 0.15 +0.1
2,197,395 - Psest_2069 0.15 +1.1
2,197,634 + Psest_2069 0.31 +0.9
2,197,634 + Psest_2069 0.31 +0.5
2,197,634 + Psest_2069 0.31 -0.6
2,197,634 + Psest_2069 0.31 +2.6
2,197,634 + Psest_2069 0.31 +1.4
2,197,635 - Psest_2069 0.31 -0.9
2,197,635 - Psest_2069 0.31 -0.3
2,197,635 - Psest_2069 0.31 +0.9
2,197,822 + Psest_2069 0.44 -1.5
2,197,957 - Psest_2069 0.53 +0.7
2,197,957 - Psest_2069 0.53 +0.2
2,198,032 + Psest_2069 0.58 +2.9

Or see this region's nucleotide sequence