Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1591

Experiment: Ionizing radiation, 319.06 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1590 and Psest_1591 are separated by 196 nucleotidesPsest_1591 and Psest_1592 overlap by 4 nucleotidesPsest_1592 and Psest_1593 are separated by 10 nucleotidesPsest_1593 and Psest_1594 are separated by 31 nucleotides Psest_1590: Psest_1590 - copper-resistance protein, CopA family, at 1,694,197 to 1,695,975 _1590 Psest_1591: Psest_1591 - hypothetical protein, at 1,696,172 to 1,696,828 _1591 Psest_1592: Psest_1592 - hypothetical protein, at 1,696,825 to 1,697,379 _1592 Psest_1593: Psest_1593 - hypothetical protein, at 1,697,390 to 1,697,740 _1593 Psest_1594: Psest_1594 - Predicted metal-binding protein, at 1,697,772 to 1,698,218 _1594 Position (kb) 1696 1697Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1695.233 kb on + strand, within Psest_1590at 1695.233 kb on + strand, within Psest_1590at 1695.233 kb on + strand, within Psest_1590at 1695.234 kb on - strand, within Psest_1590at 1695.234 kb on - strand, within Psest_1590at 1695.234 kb on - strand, within Psest_1590at 1695.239 kb on + strand, within Psest_1590at 1695.240 kb on - strand, within Psest_1590at 1695.240 kb on - strand, within Psest_1590at 1695.240 kb on - strand, within Psest_1590at 1695.240 kb on - strand, within Psest_1590at 1695.380 kb on + strand, within Psest_1590at 1695.380 kb on + strand, within Psest_1590at 1695.380 kb on + strand, within Psest_1590at 1695.381 kb on - strand, within Psest_1590at 1695.381 kb on - strand, within Psest_1590at 1695.383 kb on + strand, within Psest_1590at 1695.383 kb on + strand, within Psest_1590at 1695.384 kb on - strand, within Psest_1590at 1695.451 kb on + strand, within Psest_1590at 1695.451 kb on + strand, within Psest_1590at 1695.452 kb on - strand, within Psest_1590at 1695.470 kb on + strand, within Psest_1590at 1695.471 kb on - strand, within Psest_1590at 1695.471 kb on - strand, within Psest_1590at 1695.555 kb on - strand, within Psest_1590at 1695.560 kb on + strand, within Psest_1590at 1695.560 kb on + strand, within Psest_1590at 1695.561 kb on - strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1696.050 kb on + strandat 1696.051 kb on - strandat 1696.097 kb on + strandat 1696.177 kb on + strandat 1696.177 kb on + strandat 1696.178 kb on - strandat 1696.178 kb on - strandat 1696.178 kb on - strandat 1696.178 kb on - strandat 1696.209 kb on + strandat 1696.250 kb on + strand, within Psest_1591at 1696.250 kb on + strand, within Psest_1591at 1696.250 kb on + strand, within Psest_1591at 1696.545 kb on + strand, within Psest_1591at 1696.545 kb on + strand, within Psest_1591at 1696.545 kb on + strand, within Psest_1591at 1696.545 kb on + strand, within Psest_1591at 1696.546 kb on - strand, within Psest_1591at 1696.546 kb on - strand, within Psest_1591at 1696.546 kb on - strand, within Psest_1591at 1696.547 kb on + strand, within Psest_1591at 1696.547 kb on + strand, within Psest_1591at 1696.547 kb on + strand, within Psest_1591at 1696.548 kb on - strand, within Psest_1591at 1696.548 kb on - strand, within Psest_1591at 1696.815 kb on + strandat 1696.815 kb on + strandat 1696.816 kb on - strandat 1696.816 kb on - strandat 1696.816 kb on - strandat 1696.816 kb on - strandat 1696.816 kb on - strandat 1696.858 kb on - strandat 1696.900 kb on + strand, within Psest_1592at 1696.900 kb on + strand, within Psest_1592at 1696.900 kb on + strand, within Psest_1592at 1696.900 kb on + strand, within Psest_1592at 1696.900 kb on + strand, within Psest_1592at 1696.901 kb on - strand, within Psest_1592at 1696.901 kb on - strand, within Psest_1592at 1696.901 kb on - strand, within Psest_1592at 1696.901 kb on - strand, within Psest_1592at 1697.108 kb on + strand, within Psest_1592at 1697.108 kb on + strand, within Psest_1592at 1697.209 kb on + strand, within Psest_1592at 1697.210 kb on - strand, within Psest_1592at 1697.332 kb on + strandat 1697.332 kb on + strandat 1697.391 kb on + strandat 1697.428 kb on + strand, within Psest_1593at 1697.544 kb on + strand, within Psest_1593at 1697.545 kb on - strand, within Psest_1593at 1697.556 kb on + strand, within Psest_1593at 1697.556 kb on + strand, within Psest_1593at 1697.556 kb on + strand, within Psest_1593at 1697.557 kb on - strand, within Psest_1593at 1697.557 kb on - strand, within Psest_1593at 1697.557 kb on - strand, within Psest_1593at 1697.557 kb on - strand, within Psest_1593at 1697.601 kb on + strand, within Psest_1593at 1697.601 kb on + strand, within Psest_1593at 1697.601 kb on + strand, within Psest_1593at 1697.602 kb on - strand, within Psest_1593at 1697.602 kb on - strand, within Psest_1593at 1697.602 kb on - strand, within Psest_1593at 1697.602 kb on - strand, within Psest_1593at 1697.718 kb on + strandat 1697.718 kb on + strandat 1697.718 kb on + strandat 1697.718 kb on + strandat 1697.719 kb on - strandat 1697.719 kb on - strandat 1697.798 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 319.06 Gy,
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1,695,233 + Psest_1590 0.58 -1.0
1,695,233 + Psest_1590 0.58 -0.4
1,695,233 + Psest_1590 0.58 -1.0
1,695,234 - Psest_1590 0.58 +1.7
1,695,234 - Psest_1590 0.58 +0.1
1,695,234 - Psest_1590 0.58 -0.7
1,695,239 + Psest_1590 0.59 +0.4
1,695,240 - Psest_1590 0.59 +0.8
1,695,240 - Psest_1590 0.59 +1.3
1,695,240 - Psest_1590 0.59 -2.2
1,695,240 - Psest_1590 0.59 -0.4
1,695,380 + Psest_1590 0.66 -1.6
1,695,380 + Psest_1590 0.66 -0.8
1,695,380 + Psest_1590 0.66 -2.2
1,695,381 - Psest_1590 0.67 +1.0
1,695,381 - Psest_1590 0.67 +0.8
1,695,383 + Psest_1590 0.67 -1.1
1,695,383 + Psest_1590 0.67 -1.6
1,695,384 - Psest_1590 0.67 +0.0
1,695,451 + Psest_1590 0.70 -0.6
1,695,451 + Psest_1590 0.70 -0.6
1,695,452 - Psest_1590 0.71 -0.8
1,695,470 + Psest_1590 0.72 +1.8
1,695,471 - Psest_1590 0.72 -0.4
1,695,471 - Psest_1590 0.72 +0.4
1,695,555 - Psest_1590 0.76 -0.1
1,695,560 + Psest_1590 0.77 +0.9
1,695,560 + Psest_1590 0.77 -2.9
1,695,561 - Psest_1590 0.77 +1.0
1,695,596 + Psest_1590 0.79 -2.1
1,695,596 + Psest_1590 0.79 +0.9
1,695,596 + Psest_1590 0.79 +1.9
1,695,596 + Psest_1590 0.79 -0.5
1,695,596 + Psest_1590 0.79 -1.5
1,695,596 + Psest_1590 0.79 -0.4
1,695,596 + Psest_1590 0.79 -0.4
1,695,596 + Psest_1590 0.79 -0.6
1,695,596 + Psest_1590 0.79 -1.0
1,695,596 + Psest_1590 0.79 -0.4
1,695,596 + Psest_1590 0.79 -1.4
1,695,597 - Psest_1590 0.79 +0.2
1,695,597 - Psest_1590 0.79 -0.4
1,695,597 - Psest_1590 0.79 +0.0
1,695,597 - Psest_1590 0.79 -3.0
1,695,597 - Psest_1590 0.79 -0.1
1,695,597 - Psest_1590 0.79 +0.9
1,695,597 - Psest_1590 0.79 -1.1
1,695,597 - Psest_1590 0.79 +0.1
1,695,597 - Psest_1590 0.79 +0.5
1,696,050 + +1.3
1,696,051 - +1.7
1,696,097 + +0.9
1,696,177 + +0.9
1,696,177 + -2.5
1,696,178 - -0.1
1,696,178 - +0.5
1,696,178 - +0.6
1,696,178 - -1.4
1,696,209 + -0.1
1,696,250 + Psest_1591 0.12 +1.9
1,696,250 + Psest_1591 0.12 +1.0
1,696,250 + Psest_1591 0.12 -0.6
1,696,545 + Psest_1591 0.57 -1.3
1,696,545 + Psest_1591 0.57 +2.7
1,696,545 + Psest_1591 0.57 +0.1
1,696,545 + Psest_1591 0.57 +1.5
1,696,546 - Psest_1591 0.57 -0.4
1,696,546 - Psest_1591 0.57 +0.6
1,696,546 - Psest_1591 0.57 +1.4
1,696,547 + Psest_1591 0.57 -0.5
1,696,547 + Psest_1591 0.57 -0.0
1,696,547 + Psest_1591 0.57 -2.2
1,696,548 - Psest_1591 0.57 -0.1
1,696,548 - Psest_1591 0.57 -1.2
1,696,815 + -0.4
1,696,815 + -1.1
1,696,816 - -1.2
1,696,816 - -1.7
1,696,816 - -1.0
1,696,816 - +0.3
1,696,816 - -0.7
1,696,858 - -0.3
1,696,900 + Psest_1592 0.14 +0.8
1,696,900 + Psest_1592 0.14 -1.9
1,696,900 + Psest_1592 0.14 -1.5
1,696,900 + Psest_1592 0.14 +0.3
1,696,900 + Psest_1592 0.14 +1.5
1,696,901 - Psest_1592 0.14 +1.7
1,696,901 - Psest_1592 0.14 -1.0
1,696,901 - Psest_1592 0.14 +3.3
1,696,901 - Psest_1592 0.14 -0.1
1,697,108 + Psest_1592 0.51 -0.7
1,697,108 + Psest_1592 0.51 +0.0
1,697,209 + Psest_1592 0.69 +1.3
1,697,210 - Psest_1592 0.69 -1.1
1,697,332 + +0.2
1,697,332 + +1.6
1,697,391 + -0.9
1,697,428 + Psest_1593 0.11 +1.2
1,697,544 + Psest_1593 0.44 -0.2
1,697,545 - Psest_1593 0.44 -0.1
1,697,556 + Psest_1593 0.47 +0.9
1,697,556 + Psest_1593 0.47 +0.5
1,697,556 + Psest_1593 0.47 -0.1
1,697,557 - Psest_1593 0.48 -2.1
1,697,557 - Psest_1593 0.48 +0.5
1,697,557 - Psest_1593 0.48 -1.9
1,697,557 - Psest_1593 0.48 -0.9
1,697,601 + Psest_1593 0.60 -0.3
1,697,601 + Psest_1593 0.60 +1.4
1,697,601 + Psest_1593 0.60 -2.4
1,697,602 - Psest_1593 0.60 -2.5
1,697,602 - Psest_1593 0.60 +1.4
1,697,602 - Psest_1593 0.60 -1.4
1,697,602 - Psest_1593 0.60 +0.9
1,697,718 + +0.8
1,697,718 + -0.1
1,697,718 + +0.6
1,697,718 + -0.6
1,697,719 - +1.0
1,697,719 - +0.3
1,697,798 - -0.4

Or see this region's nucleotide sequence