Experiment: Ionizing radiation, 319.06 Gy,
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1083 and Psest_1084 are separated by 114 nucleotides Psest_1084 and Psest_1085 are separated by 319 nucleotides
Psest_1083: Psest_1083 - 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) , at 1,171,742 to 1,173,349
_1083
Psest_1084: Psest_1084 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) , at 1,173,464 to 1,174,627
_1084
Psest_1085: Psest_1085 - UV damage repair endonuclease, at 1,174,947 to 1,175,969
_1085
Position (kb)
1173
1174
1175 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1172.499 kb on + strand, within Psest_1083 at 1172.500 kb on - strand, within Psest_1083 at 1172.769 kb on + strand, within Psest_1083 at 1172.769 kb on + strand, within Psest_1083 at 1172.769 kb on + strand, within Psest_1083 at 1172.770 kb on - strand, within Psest_1083 at 1172.770 kb on - strand, within Psest_1083 at 1172.928 kb on + strand, within Psest_1083 at 1172.928 kb on + strand, within Psest_1083 at 1172.928 kb on + strand, within Psest_1083 at 1172.928 kb on + strand, within Psest_1083 at 1172.928 kb on + strand, within Psest_1083 at 1172.928 kb on + strand, within Psest_1083 at 1172.928 kb on + strand, within Psest_1083 at 1172.929 kb on - strand, within Psest_1083 at 1172.929 kb on - strand, within Psest_1083 at 1172.929 kb on - strand, within Psest_1083 at 1172.929 kb on - strand, within Psest_1083 at 1172.929 kb on - strand, within Psest_1083 at 1172.929 kb on - strand, within Psest_1083 at 1172.929 kb on - strand, within Psest_1083 at 1172.997 kb on + strand, within Psest_1083 at 1173.000 kb on + strand, within Psest_1083 at 1173.000 kb on + strand, within Psest_1083 at 1173.000 kb on + strand, within Psest_1083 at 1173.000 kb on + strand, within Psest_1083 at 1173.000 kb on + strand, within Psest_1083 at 1173.000 kb on + strand, within Psest_1083 at 1173.000 kb on + strand, within Psest_1083 at 1173.000 kb on + strand, within Psest_1083 at 1173.000 kb on + strand, within Psest_1083 at 1173.000 kb on + strand, within Psest_1083 at 1173.000 kb on + strand, within Psest_1083 at 1173.001 kb on - strand, within Psest_1083 at 1173.001 kb on - strand, within Psest_1083 at 1173.001 kb on - strand, within Psest_1083 at 1173.001 kb on - strand, within Psest_1083 at 1173.189 kb on - strand at 1173.430 kb on + strand at 1173.509 kb on + strand at 1173.583 kb on + strand, within Psest_1084 at 1173.583 kb on + strand, within Psest_1084 at 1173.584 kb on - strand, within Psest_1084 at 1173.584 kb on - strand, within Psest_1084 at 1173.584 kb on - strand, within Psest_1084 at 1173.586 kb on - strand, within Psest_1084 at 1173.648 kb on + strand, within Psest_1084 at 1173.649 kb on - strand, within Psest_1084 at 1173.714 kb on + strand, within Psest_1084 at 1173.714 kb on + strand, within Psest_1084 at 1173.715 kb on - strand, within Psest_1084 at 1173.747 kb on + strand, within Psest_1084 at 1173.747 kb on + strand, within Psest_1084 at 1173.747 kb on + strand, within Psest_1084 at 1173.747 kb on + strand, within Psest_1084 at 1173.747 kb on + strand, within Psest_1084 at 1173.747 kb on + strand, within Psest_1084 at 1173.747 kb on + strand, within Psest_1084 at 1173.747 kb on + strand, within Psest_1084 at 1173.747 kb on + strand, within Psest_1084 at 1173.747 kb on + strand, within Psest_1084 at 1173.747 kb on + strand, within Psest_1084 at 1173.747 kb on + strand, within Psest_1084 at 1173.748 kb on - strand, within Psest_1084 at 1173.748 kb on - strand, within Psest_1084 at 1173.748 kb on - strand, within Psest_1084 at 1173.748 kb on - strand, within Psest_1084 at 1173.748 kb on - strand, within Psest_1084 at 1173.748 kb on - strand, within Psest_1084 at 1173.748 kb on - strand, within Psest_1084 at 1173.748 kb on - strand, within Psest_1084 at 1173.822 kb on + strand, within Psest_1084 at 1173.822 kb on + strand, within Psest_1084 at 1173.822 kb on + strand, within Psest_1084 at 1173.823 kb on + strand, within Psest_1084 at 1173.823 kb on - strand, within Psest_1084 at 1173.823 kb on - strand, within Psest_1084 at 1174.107 kb on + strand, within Psest_1084 at 1174.107 kb on + strand, within Psest_1084 at 1174.107 kb on + strand, within Psest_1084 at 1174.108 kb on - strand, within Psest_1084 at 1174.108 kb on - strand, within Psest_1084 at 1174.108 kb on - strand, within Psest_1084 at 1174.116 kb on + strand, within Psest_1084 at 1174.116 kb on + strand, within Psest_1084 at 1174.116 kb on + strand, within Psest_1084 at 1174.116 kb on + strand, within Psest_1084 at 1174.116 kb on + strand, within Psest_1084 at 1174.116 kb on + strand, within Psest_1084 at 1174.117 kb on - strand, within Psest_1084 at 1174.117 kb on - strand, within Psest_1084 at 1174.117 kb on - strand, within Psest_1084 at 1174.284 kb on + strand, within Psest_1084 at 1174.437 kb on + strand, within Psest_1084 at 1174.621 kb on - strand at 1174.621 kb on - strand at 1174.648 kb on + strand at 1174.648 kb on + strand at 1174.648 kb on + strand at 1174.648 kb on + strand at 1174.648 kb on + strand at 1174.648 kb on + strand at 1174.649 kb on - strand at 1174.649 kb on - strand at 1174.726 kb on + strand at 1174.748 kb on + strand at 1174.813 kb on + strand at 1174.814 kb on - strand at 1174.814 kb on - strand at 1174.899 kb on + strand at 1174.974 kb on + strand at 1175.149 kb on - strand, within Psest_1085 at 1175.211 kb on + strand, within Psest_1085 at 1175.211 kb on + strand, within Psest_1085 at 1175.211 kb on + strand, within Psest_1085 at 1175.212 kb on - strand, within Psest_1085 at 1175.212 kb on - strand, within Psest_1085 at 1175.212 kb on - strand, within Psest_1085 at 1175.212 kb on - strand, within Psest_1085 at 1175.212 kb on - strand, within Psest_1085 at 1175.568 kb on + strand, within Psest_1085 at 1175.568 kb on + strand, within Psest_1085 at 1175.569 kb on - strand, within Psest_1085 at 1175.569 kb on - strand, within Psest_1085
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 319.06 Gy, remove 1,172,499 + Psest_1083 0.47 +3.3 1,172,500 - Psest_1083 0.47 -2.0 1,172,769 + Psest_1083 0.64 +3.1 1,172,769 + Psest_1083 0.64 -0.1 1,172,769 + Psest_1083 0.64 +0.8 1,172,770 - Psest_1083 0.64 -0.3 1,172,770 - Psest_1083 0.64 +0.7 1,172,928 + Psest_1083 0.74 -0.3 1,172,928 + Psest_1083 0.74 -0.4 1,172,928 + Psest_1083 0.74 +1.6 1,172,928 + Psest_1083 0.74 -0.1 1,172,928 + Psest_1083 0.74 -1.3 1,172,928 + Psest_1083 0.74 -0.9 1,172,928 + Psest_1083 0.74 -1.4 1,172,929 - Psest_1083 0.74 +0.2 1,172,929 - Psest_1083 0.74 -0.1 1,172,929 - Psest_1083 0.74 -0.3 1,172,929 - Psest_1083 0.74 -1.6 1,172,929 - Psest_1083 0.74 -0.8 1,172,929 - Psest_1083 0.74 +1.8 1,172,929 - Psest_1083 0.74 -0.5 1,172,997 + Psest_1083 0.78 +0.9 1,173,000 + Psest_1083 0.78 +0.1 1,173,000 + Psest_1083 0.78 +0.7 1,173,000 + Psest_1083 0.78 -1.1 1,173,000 + Psest_1083 0.78 +2.6 1,173,000 + Psest_1083 0.78 +0.3 1,173,000 + Psest_1083 0.78 -0.7 1,173,000 + Psest_1083 0.78 -1.2 1,173,000 + Psest_1083 0.78 +1.2 1,173,000 + Psest_1083 0.78 -2.1 1,173,000 + Psest_1083 0.78 -2.1 1,173,000 + Psest_1083 0.78 +0.3 1,173,001 - Psest_1083 0.78 +0.6 1,173,001 - Psest_1083 0.78 +1.8 1,173,001 - Psest_1083 0.78 +0.8 1,173,001 - Psest_1083 0.78 +0.8 1,173,189 - +0.4 1,173,430 + +2.4 1,173,509 + -1.9 1,173,583 + Psest_1084 0.10 +0.6 1,173,583 + Psest_1084 0.10 +0.9 1,173,584 - Psest_1084 0.10 +0.3 1,173,584 - Psest_1084 0.10 -1.0 1,173,584 - Psest_1084 0.10 -1.9 1,173,586 - Psest_1084 0.10 +0.4 1,173,648 + Psest_1084 0.16 -3.1 1,173,649 - Psest_1084 0.16 -0.5 1,173,714 + Psest_1084 0.21 -1.9 1,173,714 + Psest_1084 0.21 -1.4 1,173,715 - Psest_1084 0.22 +0.3 1,173,747 + Psest_1084 0.24 +0.5 1,173,747 + Psest_1084 0.24 +0.9 1,173,747 + Psest_1084 0.24 -2.4 1,173,747 + Psest_1084 0.24 -0.4 1,173,747 + Psest_1084 0.24 -0.1 1,173,747 + Psest_1084 0.24 +0.5 1,173,747 + Psest_1084 0.24 -0.3 1,173,747 + Psest_1084 0.24 -1.8 1,173,747 + Psest_1084 0.24 -0.6 1,173,747 + Psest_1084 0.24 +0.8 1,173,747 + Psest_1084 0.24 -0.1 1,173,747 + Psest_1084 0.24 +0.7 1,173,748 - Psest_1084 0.24 -0.4 1,173,748 - Psest_1084 0.24 -1.0 1,173,748 - Psest_1084 0.24 +1.5 1,173,748 - Psest_1084 0.24 -1.4 1,173,748 - Psest_1084 0.24 +0.1 1,173,748 - Psest_1084 0.24 +0.4 1,173,748 - Psest_1084 0.24 -0.9 1,173,748 - Psest_1084 0.24 -0.5 1,173,822 + Psest_1084 0.31 -0.9 1,173,822 + Psest_1084 0.31 -2.6 1,173,822 + Psest_1084 0.31 +0.9 1,173,823 + Psest_1084 0.31 -1.8 1,173,823 - Psest_1084 0.31 -0.6 1,173,823 - Psest_1084 0.31 -0.1 1,174,107 + Psest_1084 0.55 -0.3 1,174,107 + Psest_1084 0.55 +0.4 1,174,107 + Psest_1084 0.55 -0.9 1,174,108 - Psest_1084 0.55 +1.5 1,174,108 - Psest_1084 0.55 -0.7 1,174,108 - Psest_1084 0.55 -2.7 1,174,116 + Psest_1084 0.56 -3.0 1,174,116 + Psest_1084 0.56 -2.4 1,174,116 + Psest_1084 0.56 -0.9 1,174,116 + Psest_1084 0.56 +2.3 1,174,116 + Psest_1084 0.56 -1.1 1,174,116 + Psest_1084 0.56 -1.6 1,174,117 - Psest_1084 0.56 -1.3 1,174,117 - Psest_1084 0.56 -1.9 1,174,117 - Psest_1084 0.56 -0.1 1,174,284 + Psest_1084 0.70 -2.6 1,174,437 + Psest_1084 0.84 -0.6 1,174,621 - +0.4 1,174,621 - +0.1 1,174,648 + -3.8 1,174,648 + -1.8 1,174,648 + -0.9 1,174,648 + -0.6 1,174,648 + -2.9 1,174,648 + -2.6 1,174,649 - -0.3 1,174,649 - +0.7 1,174,726 + +1.3 1,174,748 + -0.6 1,174,813 + -0.3 1,174,814 - +1.8 1,174,814 - +0.1 1,174,899 + -3.0 1,174,974 + +1.0 1,175,149 - Psest_1085 0.20 -0.0 1,175,211 + Psest_1085 0.26 +1.9 1,175,211 + Psest_1085 0.26 +0.1 1,175,211 + Psest_1085 0.26 +1.1 1,175,212 - Psest_1085 0.26 +2.1 1,175,212 - Psest_1085 0.26 +0.7 1,175,212 - Psest_1085 0.26 -1.6 1,175,212 - Psest_1085 0.26 +0.3 1,175,212 - Psest_1085 0.26 +1.9 1,175,568 + Psest_1085 0.61 +0.7 1,175,568 + Psest_1085 0.61 -2.0 1,175,569 - Psest_1085 0.61 +0.0 1,175,569 - Psest_1085 0.61 +1.1
Or see this region's nucleotide sequence