Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1084

Experiment: Ionizing radiation, 319.06 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1083 and Psest_1084 are separated by 114 nucleotidesPsest_1084 and Psest_1085 are separated by 319 nucleotides Psest_1083: Psest_1083 - 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data), at 1,171,742 to 1,173,349 _1083 Psest_1084: Psest_1084 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data), at 1,173,464 to 1,174,627 _1084 Psest_1085: Psest_1085 - UV damage repair endonuclease, at 1,174,947 to 1,175,969 _1085 Position (kb) 1173 1174 1175Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1172.499 kb on + strand, within Psest_1083at 1172.500 kb on - strand, within Psest_1083at 1172.769 kb on + strand, within Psest_1083at 1172.769 kb on + strand, within Psest_1083at 1172.769 kb on + strand, within Psest_1083at 1172.770 kb on - strand, within Psest_1083at 1172.770 kb on - strand, within Psest_1083at 1172.928 kb on + strand, within Psest_1083at 1172.928 kb on + strand, within Psest_1083at 1172.928 kb on + strand, within Psest_1083at 1172.928 kb on + strand, within Psest_1083at 1172.928 kb on + strand, within Psest_1083at 1172.928 kb on + strand, within Psest_1083at 1172.928 kb on + strand, within Psest_1083at 1172.929 kb on - strand, within Psest_1083at 1172.929 kb on - strand, within Psest_1083at 1172.929 kb on - strand, within Psest_1083at 1172.929 kb on - strand, within Psest_1083at 1172.929 kb on - strand, within Psest_1083at 1172.929 kb on - strand, within Psest_1083at 1172.929 kb on - strand, within Psest_1083at 1172.997 kb on + strand, within Psest_1083at 1173.000 kb on + strand, within Psest_1083at 1173.000 kb on + strand, within Psest_1083at 1173.000 kb on + strand, within Psest_1083at 1173.000 kb on + strand, within Psest_1083at 1173.000 kb on + strand, within Psest_1083at 1173.000 kb on + strand, within Psest_1083at 1173.000 kb on + strand, within Psest_1083at 1173.000 kb on + strand, within Psest_1083at 1173.000 kb on + strand, within Psest_1083at 1173.000 kb on + strand, within Psest_1083at 1173.000 kb on + strand, within Psest_1083at 1173.001 kb on - strand, within Psest_1083at 1173.001 kb on - strand, within Psest_1083at 1173.001 kb on - strand, within Psest_1083at 1173.001 kb on - strand, within Psest_1083at 1173.189 kb on - strandat 1173.430 kb on + strandat 1173.509 kb on + strandat 1173.583 kb on + strand, within Psest_1084at 1173.583 kb on + strand, within Psest_1084at 1173.584 kb on - strand, within Psest_1084at 1173.584 kb on - strand, within Psest_1084at 1173.584 kb on - strand, within Psest_1084at 1173.586 kb on - strand, within Psest_1084at 1173.648 kb on + strand, within Psest_1084at 1173.649 kb on - strand, within Psest_1084at 1173.714 kb on + strand, within Psest_1084at 1173.714 kb on + strand, within Psest_1084at 1173.715 kb on - strand, within Psest_1084at 1173.747 kb on + strand, within Psest_1084at 1173.747 kb on + strand, within Psest_1084at 1173.747 kb on + strand, within Psest_1084at 1173.747 kb on + strand, within Psest_1084at 1173.747 kb on + strand, within Psest_1084at 1173.747 kb on + strand, within Psest_1084at 1173.747 kb on + strand, within Psest_1084at 1173.747 kb on + strand, within Psest_1084at 1173.747 kb on + strand, within Psest_1084at 1173.747 kb on + strand, within Psest_1084at 1173.747 kb on + strand, within Psest_1084at 1173.747 kb on + strand, within Psest_1084at 1173.748 kb on - strand, within Psest_1084at 1173.748 kb on - strand, within Psest_1084at 1173.748 kb on - strand, within Psest_1084at 1173.748 kb on - strand, within Psest_1084at 1173.748 kb on - strand, within Psest_1084at 1173.748 kb on - strand, within Psest_1084at 1173.748 kb on - strand, within Psest_1084at 1173.748 kb on - strand, within Psest_1084at 1173.822 kb on + strand, within Psest_1084at 1173.822 kb on + strand, within Psest_1084at 1173.822 kb on + strand, within Psest_1084at 1173.823 kb on + strand, within Psest_1084at 1173.823 kb on - strand, within Psest_1084at 1173.823 kb on - strand, within Psest_1084at 1174.107 kb on + strand, within Psest_1084at 1174.107 kb on + strand, within Psest_1084at 1174.107 kb on + strand, within Psest_1084at 1174.108 kb on - strand, within Psest_1084at 1174.108 kb on - strand, within Psest_1084at 1174.108 kb on - strand, within Psest_1084at 1174.116 kb on + strand, within Psest_1084at 1174.116 kb on + strand, within Psest_1084at 1174.116 kb on + strand, within Psest_1084at 1174.116 kb on + strand, within Psest_1084at 1174.116 kb on + strand, within Psest_1084at 1174.116 kb on + strand, within Psest_1084at 1174.117 kb on - strand, within Psest_1084at 1174.117 kb on - strand, within Psest_1084at 1174.117 kb on - strand, within Psest_1084at 1174.284 kb on + strand, within Psest_1084at 1174.437 kb on + strand, within Psest_1084at 1174.621 kb on - strandat 1174.621 kb on - strandat 1174.648 kb on + strandat 1174.648 kb on + strandat 1174.648 kb on + strandat 1174.648 kb on + strandat 1174.648 kb on + strandat 1174.648 kb on + strandat 1174.649 kb on - strandat 1174.649 kb on - strandat 1174.726 kb on + strandat 1174.748 kb on + strandat 1174.813 kb on + strandat 1174.814 kb on - strandat 1174.814 kb on - strandat 1174.899 kb on + strandat 1174.974 kb on + strandat 1175.149 kb on - strand, within Psest_1085at 1175.211 kb on + strand, within Psest_1085at 1175.211 kb on + strand, within Psest_1085at 1175.211 kb on + strand, within Psest_1085at 1175.212 kb on - strand, within Psest_1085at 1175.212 kb on - strand, within Psest_1085at 1175.212 kb on - strand, within Psest_1085at 1175.212 kb on - strand, within Psest_1085at 1175.212 kb on - strand, within Psest_1085at 1175.568 kb on + strand, within Psest_1085at 1175.568 kb on + strand, within Psest_1085at 1175.569 kb on - strand, within Psest_1085at 1175.569 kb on - strand, within Psest_1085

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 319.06 Gy,
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1,172,499 + Psest_1083 0.47 +3.3
1,172,500 - Psest_1083 0.47 -2.0
1,172,769 + Psest_1083 0.64 +3.1
1,172,769 + Psest_1083 0.64 -0.1
1,172,769 + Psest_1083 0.64 +0.8
1,172,770 - Psest_1083 0.64 -0.3
1,172,770 - Psest_1083 0.64 +0.7
1,172,928 + Psest_1083 0.74 -0.3
1,172,928 + Psest_1083 0.74 -0.4
1,172,928 + Psest_1083 0.74 +1.6
1,172,928 + Psest_1083 0.74 -0.1
1,172,928 + Psest_1083 0.74 -1.3
1,172,928 + Psest_1083 0.74 -0.9
1,172,928 + Psest_1083 0.74 -1.4
1,172,929 - Psest_1083 0.74 +0.2
1,172,929 - Psest_1083 0.74 -0.1
1,172,929 - Psest_1083 0.74 -0.3
1,172,929 - Psest_1083 0.74 -1.6
1,172,929 - Psest_1083 0.74 -0.8
1,172,929 - Psest_1083 0.74 +1.8
1,172,929 - Psest_1083 0.74 -0.5
1,172,997 + Psest_1083 0.78 +0.9
1,173,000 + Psest_1083 0.78 +0.1
1,173,000 + Psest_1083 0.78 +0.7
1,173,000 + Psest_1083 0.78 -1.1
1,173,000 + Psest_1083 0.78 +2.6
1,173,000 + Psest_1083 0.78 +0.3
1,173,000 + Psest_1083 0.78 -0.7
1,173,000 + Psest_1083 0.78 -1.2
1,173,000 + Psest_1083 0.78 +1.2
1,173,000 + Psest_1083 0.78 -2.1
1,173,000 + Psest_1083 0.78 -2.1
1,173,000 + Psest_1083 0.78 +0.3
1,173,001 - Psest_1083 0.78 +0.6
1,173,001 - Psest_1083 0.78 +1.8
1,173,001 - Psest_1083 0.78 +0.8
1,173,001 - Psest_1083 0.78 +0.8
1,173,189 - +0.4
1,173,430 + +2.4
1,173,509 + -1.9
1,173,583 + Psest_1084 0.10 +0.6
1,173,583 + Psest_1084 0.10 +0.9
1,173,584 - Psest_1084 0.10 +0.3
1,173,584 - Psest_1084 0.10 -1.0
1,173,584 - Psest_1084 0.10 -1.9
1,173,586 - Psest_1084 0.10 +0.4
1,173,648 + Psest_1084 0.16 -3.1
1,173,649 - Psest_1084 0.16 -0.5
1,173,714 + Psest_1084 0.21 -1.9
1,173,714 + Psest_1084 0.21 -1.4
1,173,715 - Psest_1084 0.22 +0.3
1,173,747 + Psest_1084 0.24 +0.5
1,173,747 + Psest_1084 0.24 +0.9
1,173,747 + Psest_1084 0.24 -2.4
1,173,747 + Psest_1084 0.24 -0.4
1,173,747 + Psest_1084 0.24 -0.1
1,173,747 + Psest_1084 0.24 +0.5
1,173,747 + Psest_1084 0.24 -0.3
1,173,747 + Psest_1084 0.24 -1.8
1,173,747 + Psest_1084 0.24 -0.6
1,173,747 + Psest_1084 0.24 +0.8
1,173,747 + Psest_1084 0.24 -0.1
1,173,747 + Psest_1084 0.24 +0.7
1,173,748 - Psest_1084 0.24 -0.4
1,173,748 - Psest_1084 0.24 -1.0
1,173,748 - Psest_1084 0.24 +1.5
1,173,748 - Psest_1084 0.24 -1.4
1,173,748 - Psest_1084 0.24 +0.1
1,173,748 - Psest_1084 0.24 +0.4
1,173,748 - Psest_1084 0.24 -0.9
1,173,748 - Psest_1084 0.24 -0.5
1,173,822 + Psest_1084 0.31 -0.9
1,173,822 + Psest_1084 0.31 -2.6
1,173,822 + Psest_1084 0.31 +0.9
1,173,823 + Psest_1084 0.31 -1.8
1,173,823 - Psest_1084 0.31 -0.6
1,173,823 - Psest_1084 0.31 -0.1
1,174,107 + Psest_1084 0.55 -0.3
1,174,107 + Psest_1084 0.55 +0.4
1,174,107 + Psest_1084 0.55 -0.9
1,174,108 - Psest_1084 0.55 +1.5
1,174,108 - Psest_1084 0.55 -0.7
1,174,108 - Psest_1084 0.55 -2.7
1,174,116 + Psest_1084 0.56 -3.0
1,174,116 + Psest_1084 0.56 -2.4
1,174,116 + Psest_1084 0.56 -0.9
1,174,116 + Psest_1084 0.56 +2.3
1,174,116 + Psest_1084 0.56 -1.1
1,174,116 + Psest_1084 0.56 -1.6
1,174,117 - Psest_1084 0.56 -1.3
1,174,117 - Psest_1084 0.56 -1.9
1,174,117 - Psest_1084 0.56 -0.1
1,174,284 + Psest_1084 0.70 -2.6
1,174,437 + Psest_1084 0.84 -0.6
1,174,621 - +0.4
1,174,621 - +0.1
1,174,648 + -3.8
1,174,648 + -1.8
1,174,648 + -0.9
1,174,648 + -0.6
1,174,648 + -2.9
1,174,648 + -2.6
1,174,649 - -0.3
1,174,649 - +0.7
1,174,726 + +1.3
1,174,748 + -0.6
1,174,813 + -0.3
1,174,814 - +1.8
1,174,814 - +0.1
1,174,899 + -3.0
1,174,974 + +1.0
1,175,149 - Psest_1085 0.20 -0.0
1,175,211 + Psest_1085 0.26 +1.9
1,175,211 + Psest_1085 0.26 +0.1
1,175,211 + Psest_1085 0.26 +1.1
1,175,212 - Psest_1085 0.26 +2.1
1,175,212 - Psest_1085 0.26 +0.7
1,175,212 - Psest_1085 0.26 -1.6
1,175,212 - Psest_1085 0.26 +0.3
1,175,212 - Psest_1085 0.26 +1.9
1,175,568 + Psest_1085 0.61 +0.7
1,175,568 + Psest_1085 0.61 -2.0
1,175,569 - Psest_1085 0.61 +0.0
1,175,569 - Psest_1085 0.61 +1.1

Or see this region's nucleotide sequence