Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0898

Experiment: Ionizing radiation, 0 Gy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0897 and Psest_0898 overlap by 4 nucleotidesPsest_0898 and Psest_0899 are separated by 78 nucleotides Psest_0897: Psest_0897 - VRR-NUC domain., at 972,554 to 974,193 _0897 Psest_0898: Psest_0898 - hypothetical protein, at 974,190 to 974,696 _0898 Psest_0899: Psest_0899 - Excinuclease ATPase subunit, at 974,775 to 977,426 _0899 Position (kb) 974 975Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 973.199 kb on + strand, within Psest_0897at 973.199 kb on + strand, within Psest_0897at 973.199 kb on + strand, within Psest_0897at 973.241 kb on + strand, within Psest_0897at 973.242 kb on - strand, within Psest_0897at 973.276 kb on + strand, within Psest_0897at 973.277 kb on - strand, within Psest_0897at 973.441 kb on + strand, within Psest_0897at 973.442 kb on - strand, within Psest_0897at 973.442 kb on - strand, within Psest_0897at 973.461 kb on + strand, within Psest_0897at 973.589 kb on + strand, within Psest_0897at 973.622 kb on + strand, within Psest_0897at 973.622 kb on + strand, within Psest_0897at 973.622 kb on + strand, within Psest_0897at 973.622 kb on + strand, within Psest_0897at 973.622 kb on + strand, within Psest_0897at 973.622 kb on + strand, within Psest_0897at 973.622 kb on + strand, within Psest_0897at 973.622 kb on + strand, within Psest_0897at 973.623 kb on - strand, within Psest_0897at 973.623 kb on - strand, within Psest_0897at 973.623 kb on - strand, within Psest_0897at 973.666 kb on + strand, within Psest_0897at 973.666 kb on + strand, within Psest_0897at 973.666 kb on + strand, within Psest_0897at 973.666 kb on + strand, within Psest_0897at 973.666 kb on + strand, within Psest_0897at 973.666 kb on + strand, within Psest_0897at 973.666 kb on + strand, within Psest_0897at 973.666 kb on + strand, within Psest_0897at 973.666 kb on + strand, within Psest_0897at 973.666 kb on + strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.667 kb on - strand, within Psest_0897at 973.795 kb on + strand, within Psest_0897at 973.796 kb on - strand, within Psest_0897at 973.796 kb on - strand, within Psest_0897at 973.796 kb on - strand, within Psest_0897at 973.829 kb on + strand, within Psest_0897at 973.830 kb on - strand, within Psest_0897at 973.853 kb on - strand, within Psest_0897at 973.853 kb on - strand, within Psest_0897at 973.947 kb on - strand, within Psest_0897at 974.162 kb on + strandat 974.162 kb on + strandat 974.162 kb on + strandat 974.162 kb on + strandat 974.162 kb on + strandat 974.162 kb on + strandat 974.162 kb on + strandat 974.163 kb on - strandat 974.163 kb on - strandat 974.163 kb on - strandat 974.163 kb on - strandat 974.163 kb on - strandat 974.163 kb on - strandat 974.163 kb on - strandat 974.163 kb on - strandat 974.170 kb on + strandat 974.170 kb on + strandat 974.170 kb on + strandat 974.170 kb on + strandat 974.171 kb on - strandat 974.331 kb on + strand, within Psest_0898at 974.332 kb on - strand, within Psest_0898at 974.332 kb on - strand, within Psest_0898at 974.332 kb on - strand, within Psest_0898at 974.332 kb on - strand, within Psest_0898at 974.344 kb on + strand, within Psest_0898at 974.344 kb on + strand, within Psest_0898at 974.350 kb on + strand, within Psest_0898at 974.351 kb on - strand, within Psest_0898at 974.351 kb on - strand, within Psest_0898at 974.351 kb on - strand, within Psest_0898at 974.351 kb on - strand, within Psest_0898at 974.351 kb on - strand, within Psest_0898at 974.419 kb on + strand, within Psest_0898at 974.419 kb on + strand, within Psest_0898at 974.420 kb on - strand, within Psest_0898at 974.420 kb on - strand, within Psest_0898at 974.559 kb on + strand, within Psest_0898at 974.559 kb on + strand, within Psest_0898at 974.559 kb on + strand, within Psest_0898at 974.559 kb on + strand, within Psest_0898at 974.560 kb on - strand, within Psest_0898at 974.560 kb on - strand, within Psest_0898at 974.761 kb on + strandat 974.761 kb on + strandat 974.761 kb on + strandat 974.761 kb on + strandat 974.761 kb on + strandat 974.761 kb on + strandat 974.769 kb on - strandat 974.786 kb on + strandat 974.786 kb on + strandat 974.786 kb on + strandat 974.787 kb on - strandat 974.787 kb on - strandat 974.787 kb on - strandat 974.955 kb on + strandat 974.955 kb on + strandat 974.955 kb on + strandat 974.955 kb on + strandat 974.955 kb on + strandat 974.955 kb on + strandat 974.955 kb on + strandat 974.955 kb on + strandat 974.955 kb on + strandat 974.955 kb on + strandat 974.955 kb on + strandat 974.955 kb on + strandat 974.955 kb on + strandat 974.956 kb on - strandat 974.956 kb on - strandat 974.956 kb on - strandat 974.956 kb on - strandat 974.956 kb on - strandat 974.956 kb on - strandat 975.038 kb on - strandat 975.038 kb on - strandat 975.038 kb on - strandat 975.038 kb on - strandat 975.038 kb on - strandat 975.153 kb on + strand, within Psest_0899at 975.153 kb on + strand, within Psest_0899at 975.153 kb on + strand, within Psest_0899at 975.153 kb on + strand, within Psest_0899at 975.153 kb on + strand, within Psest_0899at 975.153 kb on + strand, within Psest_0899at 975.153 kb on + strand, within Psest_0899at 975.153 kb on + strand, within Psest_0899at 975.153 kb on + strand, within Psest_0899at 975.153 kb on + strand, within Psest_0899at 975.154 kb on - strand, within Psest_0899at 975.154 kb on - strand, within Psest_0899at 975.154 kb on - strand, within Psest_0899at 975.154 kb on - strand, within Psest_0899at 975.154 kb on - strand, within Psest_0899at 975.154 kb on - strand, within Psest_0899at 975.154 kb on - strand, within Psest_0899at 975.196 kb on - strand, within Psest_0899at 975.264 kb on + strand, within Psest_0899at 975.264 kb on + strand, within Psest_0899at 975.264 kb on + strand, within Psest_0899at 975.265 kb on - strand, within Psest_0899at 975.265 kb on - strand, within Psest_0899at 975.265 kb on - strand, within Psest_0899at 975.440 kb on + strand, within Psest_0899at 975.440 kb on + strand, within Psest_0899at 975.440 kb on + strand, within Psest_0899at 975.440 kb on + strand, within Psest_0899at 975.440 kb on + strand, within Psest_0899at 975.441 kb on - strand, within Psest_0899at 975.441 kb on - strand, within Psest_0899at 975.441 kb on - strand, within Psest_0899at 975.441 kb on - strand, within Psest_0899at 975.474 kb on + strand, within Psest_0899at 975.474 kb on + strand, within Psest_0899at 975.534 kb on + strand, within Psest_0899at 975.534 kb on + strand, within Psest_0899at 975.534 kb on + strand, within Psest_0899at 975.535 kb on - strand, within Psest_0899at 975.535 kb on - strand, within Psest_0899at 975.535 kb on - strand, within Psest_0899at 975.535 kb on - strand, within Psest_0899at 975.535 kb on - strand, within Psest_0899at 975.564 kb on + strand, within Psest_0899at 975.564 kb on + strand, within Psest_0899at 975.565 kb on - strand, within Psest_0899at 975.565 kb on - strand, within Psest_0899

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 0 Gy
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973,199 + Psest_0897 0.39 -0.7
973,199 + Psest_0897 0.39 +0.2
973,199 + Psest_0897 0.39 -0.8
973,241 + Psest_0897 0.42 +0.3
973,242 - Psest_0897 0.42 +0.1
973,276 + Psest_0897 0.44 -0.0
973,277 - Psest_0897 0.44 -1.4
973,441 + Psest_0897 0.54 -0.5
973,442 - Psest_0897 0.54 +0.0
973,442 - Psest_0897 0.54 -0.7
973,461 + Psest_0897 0.55 -1.7
973,589 + Psest_0897 0.63 +0.6
973,622 + Psest_0897 0.65 +0.8
973,622 + Psest_0897 0.65 +0.1
973,622 + Psest_0897 0.65 +0.6
973,622 + Psest_0897 0.65 -0.3
973,622 + Psest_0897 0.65 -1.1
973,622 + Psest_0897 0.65 +1.2
973,622 + Psest_0897 0.65 +0.3
973,622 + Psest_0897 0.65 +1.9
973,623 - Psest_0897 0.65 -0.0
973,623 - Psest_0897 0.65 -0.1
973,623 - Psest_0897 0.65 -1.9
973,666 + Psest_0897 0.68 -0.8
973,666 + Psest_0897 0.68 -0.2
973,666 + Psest_0897 0.68 +0.7
973,666 + Psest_0897 0.68 +0.3
973,666 + Psest_0897 0.68 -2.0
973,666 + Psest_0897 0.68 +1.3
973,666 + Psest_0897 0.68 +0.1
973,666 + Psest_0897 0.68 -1.6
973,666 + Psest_0897 0.68 -0.6
973,666 + Psest_0897 0.68 -1.6
973,667 - Psest_0897 0.68 -0.7
973,667 - Psest_0897 0.68 -0.0
973,667 - Psest_0897 0.68 -0.6
973,667 - Psest_0897 0.68 -0.2
973,667 - Psest_0897 0.68 -1.3
973,667 - Psest_0897 0.68 +1.0
973,667 - Psest_0897 0.68 -0.7
973,667 - Psest_0897 0.68 -1.3
973,667 - Psest_0897 0.68 +0.3
973,667 - Psest_0897 0.68 -0.0
973,667 - Psest_0897 0.68 +1.4
973,667 - Psest_0897 0.68 -0.3
973,667 - Psest_0897 0.68 +0.8
973,667 - Psest_0897 0.68 -0.5
973,667 - Psest_0897 0.68 -0.4
973,795 + Psest_0897 0.76 +0.4
973,796 - Psest_0897 0.76 +0.7
973,796 - Psest_0897 0.76 +0.3
973,796 - Psest_0897 0.76 +0.3
973,829 + Psest_0897 0.78 -0.7
973,830 - Psest_0897 0.78 +0.3
973,853 - Psest_0897 0.79 -2.0
973,853 - Psest_0897 0.79 +0.6
973,947 - Psest_0897 0.85 -0.9
974,162 + -1.5
974,162 + -1.3
974,162 + -0.6
974,162 + +0.3
974,162 + +0.3
974,162 + -0.3
974,162 + +0.4
974,163 - -0.2
974,163 - -2.2
974,163 - +0.4
974,163 - -2.5
974,163 - +0.3
974,163 - +0.7
974,163 - -0.7
974,163 - +0.5
974,170 + +0.7
974,170 + -0.4
974,170 + +0.6
974,170 + +0.0
974,171 - -0.1
974,331 + Psest_0898 0.28 -3.0
974,332 - Psest_0898 0.28 +0.5
974,332 - Psest_0898 0.28 +0.1
974,332 - Psest_0898 0.28 -0.6
974,332 - Psest_0898 0.28 +0.6
974,344 + Psest_0898 0.30 +1.3
974,344 + Psest_0898 0.30 +1.9
974,350 + Psest_0898 0.32 +0.5
974,351 - Psest_0898 0.32 -1.3
974,351 - Psest_0898 0.32 +0.5
974,351 - Psest_0898 0.32 +0.1
974,351 - Psest_0898 0.32 +0.9
974,351 - Psest_0898 0.32 +0.9
974,419 + Psest_0898 0.45 +1.1
974,419 + Psest_0898 0.45 +1.8
974,420 - Psest_0898 0.45 +0.9
974,420 - Psest_0898 0.45 +0.7
974,559 + Psest_0898 0.73 -3.3
974,559 + Psest_0898 0.73 +3.0
974,559 + Psest_0898 0.73 +0.3
974,559 + Psest_0898 0.73 -0.5
974,560 - Psest_0898 0.73 -4.2
974,560 - Psest_0898 0.73 -0.4
974,761 + +0.3
974,761 + -0.3
974,761 + -0.3
974,761 + +0.1
974,761 + +0.4
974,761 + -1.1
974,769 - +0.5
974,786 + -0.1
974,786 + -1.7
974,786 + -0.4
974,787 - +0.3
974,787 - +0.6
974,787 - -0.0
974,955 + +1.6
974,955 + +0.6
974,955 + +0.6
974,955 + +1.1
974,955 + -0.2
974,955 + -1.0
974,955 + +0.5
974,955 + +1.0
974,955 + -0.2
974,955 + -0.7
974,955 + +2.3
974,955 + +1.3
974,955 + +0.8
974,956 - -1.1
974,956 - -0.3
974,956 - -0.2
974,956 - -0.6
974,956 - -0.1
974,956 - -1.7
975,038 - -1.9
975,038 - -1.1
975,038 - -0.3
975,038 - -0.2
975,038 - -3.2
975,153 + Psest_0899 0.14 -0.7
975,153 + Psest_0899 0.14 +1.5
975,153 + Psest_0899 0.14 -1.6
975,153 + Psest_0899 0.14 -0.3
975,153 + Psest_0899 0.14 -3.2
975,153 + Psest_0899 0.14 -0.5
975,153 + Psest_0899 0.14 +0.4
975,153 + Psest_0899 0.14 -0.8
975,153 + Psest_0899 0.14 +1.9
975,153 + Psest_0899 0.14 +0.5
975,154 - Psest_0899 0.14 +0.7
975,154 - Psest_0899 0.14 +0.3
975,154 - Psest_0899 0.14 -3.2
975,154 - Psest_0899 0.14 +1.1
975,154 - Psest_0899 0.14 +2.3
975,154 - Psest_0899 0.14 +0.2
975,154 - Psest_0899 0.14 -0.1
975,196 - Psest_0899 0.16 -1.0
975,264 + Psest_0899 0.18 +0.0
975,264 + Psest_0899 0.18 -0.2
975,264 + Psest_0899 0.18 +1.3
975,265 - Psest_0899 0.18 +1.0
975,265 - Psest_0899 0.18 +0.6
975,265 - Psest_0899 0.18 -0.2
975,440 + Psest_0899 0.25 -0.1
975,440 + Psest_0899 0.25 +0.8
975,440 + Psest_0899 0.25 -0.2
975,440 + Psest_0899 0.25 -1.6
975,440 + Psest_0899 0.25 -0.9
975,441 - Psest_0899 0.25 +5.1
975,441 - Psest_0899 0.25 -2.2
975,441 - Psest_0899 0.25 +1.5
975,441 - Psest_0899 0.25 -2.3
975,474 + Psest_0899 0.26 -0.6
975,474 + Psest_0899 0.26 -1.3
975,534 + Psest_0899 0.29 -0.3
975,534 + Psest_0899 0.29 -0.6
975,534 + Psest_0899 0.29 -0.5
975,535 - Psest_0899 0.29 +0.0
975,535 - Psest_0899 0.29 +1.6
975,535 - Psest_0899 0.29 -1.4
975,535 - Psest_0899 0.29 -2.5
975,535 - Psest_0899 0.29 +0.2
975,564 + Psest_0899 0.30 -0.7
975,564 + Psest_0899 0.30 -0.4
975,565 - Psest_0899 0.30 +0.6
975,565 - Psest_0899 0.30 +0.8

Or see this region's nucleotide sequence