Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0871

Experiment: Ionizing radiation, 0 Gy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0870 and Psest_0871 are separated by 81 nucleotidesPsest_0871 and Psest_0872 are separated by 174 nucleotidesPsest_0872 and Psest_0873 overlap by 1 nucleotides Psest_0870: Psest_0870 - Alpha-glucosidase (EC 3.2.1.20) (from data), at 945,527 to 947,155 _0870 Psest_0871: Psest_0871 - maltose ABC transporter, ATPase component MalK (from data), at 947,237 to 948,352 _0871 Psest_0872: Psest_0872 - Helix-turn-helix., at 948,527 to 948,844 _0872 Psest_0873: Psest_0873 - HipA N-terminal domain, at 948,844 to 950,163 _0873 Position (kb) 947 948 949Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 946.249 kb on + strand, within Psest_0870at 946.249 kb on + strand, within Psest_0870at 946.250 kb on - strand, within Psest_0870at 946.250 kb on - strand, within Psest_0870at 946.250 kb on - strand, within Psest_0870at 946.253 kb on + strand, within Psest_0870at 946.253 kb on + strand, within Psest_0870at 946.253 kb on + strand, within Psest_0870at 946.253 kb on + strand, within Psest_0870at 946.253 kb on + strand, within Psest_0870at 946.253 kb on + strand, within Psest_0870at 946.253 kb on + strand, within Psest_0870at 946.253 kb on + strand, within Psest_0870at 946.254 kb on - strand, within Psest_0870at 946.412 kb on + strand, within Psest_0870at 946.451 kb on + strand, within Psest_0870at 946.634 kb on + strand, within Psest_0870at 946.634 kb on + strand, within Psest_0870at 946.634 kb on + strand, within Psest_0870at 946.634 kb on + strand, within Psest_0870at 946.635 kb on - strand, within Psest_0870at 946.635 kb on - strand, within Psest_0870at 946.635 kb on - strand, within Psest_0870at 946.635 kb on - strand, within Psest_0870at 946.635 kb on - strand, within Psest_0870at 946.705 kb on + strand, within Psest_0870at 946.946 kb on + strand, within Psest_0870at 946.947 kb on - strand, within Psest_0870at 946.947 kb on - strand, within Psest_0870at 946.947 kb on - strand, within Psest_0870at 946.947 kb on - strand, within Psest_0870at 946.947 kb on - strand, within Psest_0870at 947.073 kb on + strandat 947.094 kb on - strandat 947.135 kb on + strandat 947.199 kb on + strandat 947.233 kb on - strandat 947.233 kb on - strandat 947.273 kb on + strandat 947.273 kb on + strandat 947.274 kb on - strandat 947.274 kb on - strandat 947.486 kb on + strand, within Psest_0871at 947.486 kb on + strand, within Psest_0871at 947.486 kb on + strand, within Psest_0871at 947.801 kb on + strand, within Psest_0871at 947.801 kb on + strand, within Psest_0871at 947.801 kb on + strand, within Psest_0871at 947.801 kb on + strand, within Psest_0871at 947.801 kb on + strand, within Psest_0871at 947.801 kb on + strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.802 kb on - strand, within Psest_0871at 947.901 kb on - strand, within Psest_0871at 948.167 kb on + strand, within Psest_0871at 948.168 kb on - strand, within Psest_0871at 948.179 kb on + strand, within Psest_0871at 948.179 kb on + strand, within Psest_0871at 948.179 kb on + strand, within Psest_0871at 948.179 kb on + strand, within Psest_0871at 948.180 kb on - strand, within Psest_0871at 948.180 kb on - strand, within Psest_0871at 948.180 kb on - strand, within Psest_0871at 948.344 kb on + strandat 948.344 kb on + strandat 948.344 kb on + strandat 948.345 kb on - strandat 948.345 kb on - strandat 948.345 kb on - strandat 948.345 kb on - strandat 948.778 kb on + strand, within Psest_0872at 948.778 kb on + strand, within Psest_0872at 948.911 kb on + strandat 948.965 kb on + strandat 948.965 kb on + strandat 948.965 kb on + strandat 948.966 kb on - strandat 948.966 kb on - strandat 948.966 kb on - strandat 949.302 kb on + strand, within Psest_0873at 949.302 kb on + strand, within Psest_0873at 949.302 kb on + strand, within Psest_0873at 949.303 kb on - strand, within Psest_0873at 949.303 kb on - strand, within Psest_0873at 949.303 kb on - strand, within Psest_0873at 949.303 kb on - strand, within Psest_0873at 949.318 kb on + strand, within Psest_0873at 949.318 kb on + strand, within Psest_0873at 949.318 kb on + strand, within Psest_0873at 949.319 kb on - strand, within Psest_0873at 949.319 kb on - strand, within Psest_0873at 949.319 kb on - strand, within Psest_0873

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 0 Gy
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946,249 + Psest_0870 0.44 -0.1
946,249 + Psest_0870 0.44 -1.1
946,250 - Psest_0870 0.44 -0.5
946,250 - Psest_0870 0.44 -0.7
946,250 - Psest_0870 0.44 +0.3
946,253 + Psest_0870 0.45 -1.3
946,253 + Psest_0870 0.45 +0.9
946,253 + Psest_0870 0.45 +1.0
946,253 + Psest_0870 0.45 -0.2
946,253 + Psest_0870 0.45 +0.0
946,253 + Psest_0870 0.45 +0.7
946,253 + Psest_0870 0.45 -0.3
946,253 + Psest_0870 0.45 -0.7
946,254 - Psest_0870 0.45 -0.4
946,412 + Psest_0870 0.54 -0.5
946,451 + Psest_0870 0.57 -1.9
946,634 + Psest_0870 0.68 +1.3
946,634 + Psest_0870 0.68 +0.1
946,634 + Psest_0870 0.68 -0.1
946,634 + Psest_0870 0.68 -2.5
946,635 - Psest_0870 0.68 -1.7
946,635 - Psest_0870 0.68 -0.5
946,635 - Psest_0870 0.68 -1.0
946,635 - Psest_0870 0.68 -0.2
946,635 - Psest_0870 0.68 -0.9
946,705 + Psest_0870 0.72 +0.5
946,946 + Psest_0870 0.87 +1.3
946,947 - Psest_0870 0.87 -0.0
946,947 - Psest_0870 0.87 -2.3
946,947 - Psest_0870 0.87 +0.9
946,947 - Psest_0870 0.87 +0.7
946,947 - Psest_0870 0.87 +0.3
947,073 + +0.3
947,094 - +0.2
947,135 + -0.6
947,199 + -0.2
947,233 - +0.8
947,233 - +1.4
947,273 + -0.2
947,273 + -0.3
947,274 - -0.1
947,274 - +1.8
947,486 + Psest_0871 0.22 +0.6
947,486 + Psest_0871 0.22 -0.5
947,486 + Psest_0871 0.22 +0.4
947,801 + Psest_0871 0.51 +0.3
947,801 + Psest_0871 0.51 +0.6
947,801 + Psest_0871 0.51 -2.9
947,801 + Psest_0871 0.51 -1.2
947,801 + Psest_0871 0.51 -0.6
947,801 + Psest_0871 0.51 -0.3
947,802 - Psest_0871 0.51 -1.2
947,802 - Psest_0871 0.51 +0.1
947,802 - Psest_0871 0.51 -0.3
947,802 - Psest_0871 0.51 +0.9
947,802 - Psest_0871 0.51 -0.3
947,802 - Psest_0871 0.51 -0.3
947,802 - Psest_0871 0.51 -0.8
947,802 - Psest_0871 0.51 +0.4
947,901 - Psest_0871 0.59 -1.7
948,167 + Psest_0871 0.83 -1.0
948,168 - Psest_0871 0.83 -0.5
948,179 + Psest_0871 0.84 -1.3
948,179 + Psest_0871 0.84 -1.3
948,179 + Psest_0871 0.84 +0.5
948,179 + Psest_0871 0.84 -1.2
948,180 - Psest_0871 0.84 -0.0
948,180 - Psest_0871 0.84 -1.6
948,180 - Psest_0871 0.84 -0.4
948,344 + +0.6
948,344 + -1.4
948,344 + -1.3
948,345 - +0.1
948,345 - -0.4
948,345 - -0.7
948,345 - -0.4
948,778 + Psest_0872 0.79 -1.4
948,778 + Psest_0872 0.79 +1.7
948,911 + -0.5
948,965 + -0.7
948,965 + -1.7
948,965 + -0.5
948,966 - +1.9
948,966 - +1.9
948,966 - +0.3
949,302 + Psest_0873 0.35 -0.1
949,302 + Psest_0873 0.35 -1.0
949,302 + Psest_0873 0.35 -0.2
949,303 - Psest_0873 0.35 +1.4
949,303 - Psest_0873 0.35 +0.3
949,303 - Psest_0873 0.35 +1.5
949,303 - Psest_0873 0.35 +0.1
949,318 + Psest_0873 0.36 +0.9
949,318 + Psest_0873 0.36 -0.2
949,318 + Psest_0873 0.36 +0.7
949,319 - Psest_0873 0.36 +1.4
949,319 - Psest_0873 0.36 +1.3
949,319 - Psest_0873 0.36 -1.2

Or see this region's nucleotide sequence