Experiment: Ionizing radiation, 0 Gy
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0606 and Psest_0607 are separated by 86 nucleotides Psest_0607 and Psest_0608 are separated by 92 nucleotides Psest_0608 and Psest_0609 overlap by 4 nucleotides Psest_0609 and Psest_0610 overlap by 90 nucleotides
Psest_0606: Psest_0606 - Predicted hydrolase (HAD superfamily), at 657,339 to 657,971
_0606
Psest_0607: Psest_0607 - Co/Zn/Cd efflux system component, at 658,058 to 658,948
_0607
Psest_0608: Psest_0608 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 659,041 to 659,445
_0608
Psest_0609: Psest_0609 - hypothetical protein, at 659,442 to 659,657
_0609
Psest_0610: Psest_0610 - heavy metal sensor kinase, at 659,568 to 660,941
_0610
Position (kb) 658
659 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.210 kb on - strand at 657.343 kb on + strand at 657.343 kb on + strand at 657.343 kb on + strand at 657.343 kb on + strand at 657.343 kb on + strand at 657.344 kb on - strand at 657.344 kb on - strand at 657.344 kb on - strand at 657.344 kb on - strand at 657.352 kb on + strand at 657.353 kb on - strand at 657.386 kb on - strand at 657.510 kb on + strand, within Psest_0606 at 657.511 kb on - strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.542 kb on - strand, within Psest_0606 at 657.542 kb on - strand, within Psest_0606 at 657.545 kb on + strand, within Psest_0606 at 657.694 kb on + strand, within Psest_0606 at 657.715 kb on - strand, within Psest_0606 at 657.715 kb on - strand, within Psest_0606 at 657.743 kb on - strand, within Psest_0606 at 657.743 kb on - strand, within Psest_0606 at 657.762 kb on + strand, within Psest_0606 at 657.763 kb on - strand, within Psest_0606 at 657.763 kb on - strand, within Psest_0606 at 657.837 kb on - strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.949 kb on - strand at 657.989 kb on + strand at 657.989 kb on + strand at 657.990 kb on - strand at 658.002 kb on + strand at 658.017 kb on + strand at 658.017 kb on + strand at 658.017 kb on + strand at 658.017 kb on + strand at 658.018 kb on - strand at 658.018 kb on - strand at 658.138 kb on - strand at 658.138 kb on - strand at 658.175 kb on + strand, within Psest_0607 at 658.175 kb on + strand, within Psest_0607 at 658.215 kb on - strand, within Psest_0607 at 658.215 kb on - strand, within Psest_0607 at 658.215 kb on - strand, within Psest_0607 at 658.317 kb on - strand, within Psest_0607 at 658.343 kb on + strand, within Psest_0607 at 658.344 kb on - strand, within Psest_0607 at 658.344 kb on - strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.364 kb on + strand, within Psest_0607 at 658.365 kb on - strand, within Psest_0607 at 658.453 kb on - strand, within Psest_0607 at 658.453 kb on - strand, within Psest_0607 at 658.467 kb on + strand, within Psest_0607 at 658.575 kb on - strand, within Psest_0607 at 658.580 kb on + strand, within Psest_0607 at 658.581 kb on - strand, within Psest_0607 at 658.581 kb on - strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.587 kb on - strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.607 kb on - strand, within Psest_0607 at 658.739 kb on + strand, within Psest_0607 at 658.740 kb on - strand, within Psest_0607 at 658.849 kb on - strand, within Psest_0607 at 658.892 kb on - strand at 658.984 kb on + strand at 658.984 kb on + strand at 658.984 kb on + strand at 658.984 kb on + strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.005 kb on - strand at 659.005 kb on - strand at 659.058 kb on - strand at 659.066 kb on + strand at 659.066 kb on + strand at 659.067 kb on - strand at 659.067 kb on - strand at 659.069 kb on + strand at 659.069 kb on + strand at 659.070 kb on - strand at 659.070 kb on - strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.080 kb on - strand at 659.080 kb on - strand at 659.080 kb on - strand at 659.098 kb on + strand, within Psest_0608 at 659.098 kb on + strand, within Psest_0608 at 659.098 kb on + strand, within Psest_0608 at 659.099 kb on - strand, within Psest_0608 at 659.099 kb on - strand, within Psest_0608 at 659.099 kb on - strand, within Psest_0608 at 659.155 kb on + strand, within Psest_0608 at 659.181 kb on - strand, within Psest_0608 at 659.245 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.272 kb on - strand, within Psest_0608 at 659.272 kb on - strand, within Psest_0608 at 659.371 kb on - strand, within Psest_0608 at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.533 kb on + strand, within Psest_0609 at 659.533 kb on + strand, within Psest_0609 at 659.697 kb on + strand at 659.697 kb on + strand at 659.697 kb on + strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.793 kb on + strand, within Psest_0610 at 659.793 kb on + strand, within Psest_0610 at 659.793 kb on + strand, within Psest_0610 at 659.793 kb on + strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.825 kb on + strand, within Psest_0610 at 659.835 kb on - strand, within Psest_0610 at 659.835 kb on - strand, within Psest_0610 at 659.888 kb on + strand, within Psest_0610 at 659.888 kb on + strand, within Psest_0610 at 659.888 kb on + strand, within Psest_0610 at 659.889 kb on - strand, within Psest_0610 at 659.889 kb on - strand, within Psest_0610 at 659.889 kb on - strand, within Psest_0610
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 0 Gy remove 657,081 + -0.3 657,081 + -0.9 657,081 + -2.0 657,081 + +2.3 657,081 + +1.9 657,210 - -0.1 657,343 + +0.3 657,343 + +0.7 657,343 + -0.7 657,343 + +3.5 657,343 + -0.6 657,344 - -0.3 657,344 - +0.8 657,344 - -0.5 657,344 - -0.0 657,352 + -1.5 657,353 - +0.1 657,386 - +0.5 657,510 + Psest_0606 0.27 +0.3 657,511 - Psest_0606 0.27 +0.0 657,541 + Psest_0606 0.32 +1.3 657,541 + Psest_0606 0.32 +0.4 657,541 + Psest_0606 0.32 -1.3 657,541 + Psest_0606 0.32 +2.9 657,541 + Psest_0606 0.32 -0.4 657,542 - Psest_0606 0.32 +0.0 657,542 - Psest_0606 0.32 +0.1 657,545 + Psest_0606 0.33 +0.3 657,694 + Psest_0606 0.56 +0.1 657,715 - Psest_0606 0.59 +0.1 657,715 - Psest_0606 0.59 +1.4 657,743 - Psest_0606 0.64 -0.7 657,743 - Psest_0606 0.64 -0.1 657,762 + Psest_0606 0.67 -0.1 657,763 - Psest_0606 0.67 -0.2 657,763 - Psest_0606 0.67 -0.6 657,837 - Psest_0606 0.79 -1.4 657,877 + Psest_0606 0.85 +0.6 657,877 + Psest_0606 0.85 -0.5 657,877 + Psest_0606 0.85 +0.2 657,877 + Psest_0606 0.85 -1.5 657,877 + Psest_0606 0.85 -0.1 657,877 + Psest_0606 0.85 -1.1 657,877 + Psest_0606 0.85 -0.6 657,878 - Psest_0606 0.85 +0.3 657,878 - Psest_0606 0.85 -1.1 657,878 - Psest_0606 0.85 -1.0 657,878 - Psest_0606 0.85 +0.7 657,878 - Psest_0606 0.85 -0.8 657,878 - Psest_0606 0.85 -0.2 657,878 - Psest_0606 0.85 +0.3 657,878 - Psest_0606 0.85 -0.1 657,949 - +0.3 657,989 + +0.8 657,989 + +1.6 657,990 - -0.9 658,002 + -0.6 658,017 + -0.3 658,017 + +0.7 658,017 + -0.9 658,017 + -1.9 658,018 - +1.4 658,018 - +0.1 658,138 - -0.5 658,138 - +0.6 658,175 + Psest_0607 0.13 +0.8 658,175 + Psest_0607 0.13 +0.3 658,215 - Psest_0607 0.18 -2.0 658,215 - Psest_0607 0.18 -3.2 658,215 - Psest_0607 0.18 -0.5 658,317 - Psest_0607 0.29 +0.4 658,343 + Psest_0607 0.32 +2.5 658,344 - Psest_0607 0.32 +0.4 658,344 - Psest_0607 0.32 -0.8 658,345 + Psest_0607 0.32 -1.3 658,345 + Psest_0607 0.32 -3.0 658,345 + Psest_0607 0.32 +0.4 658,345 + Psest_0607 0.32 +0.5 658,345 + Psest_0607 0.32 +0.9 658,346 - Psest_0607 0.32 +0.5 658,346 - Psest_0607 0.32 +2.4 658,346 - Psest_0607 0.32 -0.6 658,346 - Psest_0607 0.32 -0.7 658,346 - Psest_0607 0.32 -1.2 658,346 - Psest_0607 0.32 +3.6 658,346 - Psest_0607 0.32 -0.5 658,346 - Psest_0607 0.32 -0.6 658,364 + Psest_0607 0.34 +0.3 658,365 - Psest_0607 0.34 +2.1 658,453 - Psest_0607 0.44 -0.7 658,453 - Psest_0607 0.44 -1.0 658,467 + Psest_0607 0.46 +0.4 658,575 - Psest_0607 0.58 -0.2 658,580 + Psest_0607 0.59 -0.5 658,581 - Psest_0607 0.59 +1.3 658,581 - Psest_0607 0.59 +0.3 658,586 + Psest_0607 0.59 +0.6 658,586 + Psest_0607 0.59 -0.7 658,586 + Psest_0607 0.59 +0.9 658,586 + Psest_0607 0.59 +1.6 658,587 - Psest_0607 0.59 -0.6 658,606 + Psest_0607 0.62 +1.9 658,606 + Psest_0607 0.62 -0.0 658,606 + Psest_0607 0.62 -0.7 658,607 - Psest_0607 0.62 -0.3 658,739 + Psest_0607 0.76 +1.3 658,740 - Psest_0607 0.77 +1.7 658,849 - Psest_0607 0.89 +0.5 658,892 - -0.0 658,984 + -1.3 658,984 + -0.1 658,984 + -2.5 658,984 + +0.1 658,985 - +0.5 658,985 - +0.0 658,985 - -1.4 658,985 - -2.3 658,985 - -0.2 658,995 + -0.7 658,995 + -0.9 658,995 + -1.3 658,995 + -0.8 658,995 + +0.3 658,995 + +1.5 658,995 + -2.0 658,995 + -0.6 658,995 + +0.4 658,995 + -0.7 658,996 - -1.2 658,996 - -0.2 658,996 - -0.9 658,996 - -0.5 658,996 - +1.3 658,996 - +0.3 658,996 - -1.3 658,996 - -1.9 658,996 - +0.2 658,996 - +0.7 658,996 - +1.0 658,996 - +0.4 658,996 - +2.7 658,996 - -0.2 658,996 - +2.0 658,999 + -1.3 658,999 + +1.3 658,999 + -0.1 658,999 + +0.0 658,999 + +0.1 658,999 + +1.5 658,999 + +0.3 658,999 + -0.7 658,999 + +0.1 658,999 + +1.5 659,000 - -1.3 659,000 - -0.0 659,000 - +0.1 659,000 - -1.0 659,000 - -1.4 659,000 - +0.9 659,000 - -0.2 659,000 - -1.0 659,002 + +0.7 659,002 + -0.7 659,002 + -1.1 659,002 + -0.4 659,002 + +1.7 659,002 + -1.3 659,002 + -0.6 659,002 + -0.9 659,002 + -1.0 659,002 + -2.0 659,002 + +0.4 659,002 + +0.1 659,003 - -0.7 659,003 - +0.4 659,003 - -0.3 659,003 - -0.4 659,003 - -0.7 659,003 - -0.8 659,003 - -0.9 659,003 - -0.1 659,003 - +0.1 659,003 - -2.0 659,003 - +0.5 659,003 - +0.6 659,003 - -0.7 659,004 + +0.2 659,004 + +0.9 659,004 + -1.2 659,004 + +0.8 659,004 + +0.4 659,004 + +0.7 659,004 + -0.3 659,004 + +0.3 659,004 + +1.8 659,005 - -0.3 659,005 - +0.6 659,058 - -0.8 659,066 + +1.1 659,066 + +0.6 659,067 - -1.5 659,067 - +0.1 659,069 + -1.6 659,069 + +0.1 659,070 - -1.3 659,070 - +0.9 659,079 + -0.3 659,079 + -1.9 659,079 + +0.0 659,079 + -2.4 659,079 + +1.0 659,080 - -0.2 659,080 - +0.3 659,080 - -0.6 659,098 + Psest_0608 0.14 +0.4 659,098 + Psest_0608 0.14 -0.1 659,098 + Psest_0608 0.14 +0.3 659,099 - Psest_0608 0.14 +1.8 659,099 - Psest_0608 0.14 -1.7 659,099 - Psest_0608 0.14 -1.0 659,155 + Psest_0608 0.28 -1.5 659,181 - Psest_0608 0.35 -0.4 659,245 + Psest_0608 0.50 +0.3 659,271 + Psest_0608 0.57 -0.3 659,271 + Psest_0608 0.57 +0.1 659,271 + Psest_0608 0.57 +1.3 659,271 + Psest_0608 0.57 +0.3 659,272 - Psest_0608 0.57 +0.1 659,272 - Psest_0608 0.57 -0.2 659,371 - Psest_0608 0.81 -0.4 659,439 + +0.4 659,439 + +0.5 659,439 + -0.6 659,439 + -1.0 659,439 + -0.5 659,439 + -1.5 659,439 + -1.4 659,439 + -1.3 659,533 + Psest_0609 0.42 +1.6 659,533 + Psest_0609 0.42 -0.8 659,697 + +0.7 659,697 + -0.2 659,697 + -1.3 659,698 - -2.2 659,698 - -0.4 659,698 - +1.3 659,698 - -0.8 659,698 - +0.1 659,698 - -0.7 659,793 + Psest_0610 0.16 +0.7 659,793 + Psest_0610 0.16 +0.7 659,793 + Psest_0610 0.16 -0.5 659,793 + Psest_0610 0.16 -0.3 659,794 - Psest_0610 0.16 +1.5 659,794 - Psest_0610 0.16 +0.7 659,794 - Psest_0610 0.16 -0.7 659,794 - Psest_0610 0.16 -3.3 659,794 - Psest_0610 0.16 -0.7 659,794 - Psest_0610 0.16 +0.0 659,813 + Psest_0610 0.18 -3.0 659,813 + Psest_0610 0.18 -1.0 659,813 + Psest_0610 0.18 +0.4 659,813 + Psest_0610 0.18 +0.1 659,813 + Psest_0610 0.18 -0.3 659,813 + Psest_0610 0.18 +0.6 659,814 - Psest_0610 0.18 -0.6 659,814 - Psest_0610 0.18 -0.1 659,814 - Psest_0610 0.18 +0.7 659,814 - Psest_0610 0.18 +1.0 659,814 - Psest_0610 0.18 -0.4 659,814 - Psest_0610 0.18 -0.1 659,814 - Psest_0610 0.18 +0.4 659,814 - Psest_0610 0.18 -0.6 659,814 - Psest_0610 0.18 +0.2 659,814 - Psest_0610 0.18 +0.3 659,825 + Psest_0610 0.19 -0.0 659,835 - Psest_0610 0.19 -0.1 659,835 - Psest_0610 0.19 -1.2 659,888 + Psest_0610 0.23 -0.7 659,888 + Psest_0610 0.23 -1.7 659,888 + Psest_0610 0.23 -0.3 659,889 - Psest_0610 0.23 +1.4 659,889 - Psest_0610 0.23 -2.5 659,889 - Psest_0610 0.23 -2.9
Or see this region's nucleotide sequence