Experiment: Ionizing radiation, 0 Gy
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0439 and Psest_0440 are separated by 188 nucleotides Psest_0440 and Psest_0441 are separated by 178 nucleotides
Psest_0439: Psest_0439 - hypothetical protein, at 477,613 to 479,055
_0439
Psest_0440: Psest_0440 - hypothetical protein, at 479,244 to 479,558
_0440
Psest_0441: Psest_0441 - Subtilisin-like serine proteases, at 479,737 to 482,166
_0441
Position (kb) 479
480 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 478.301 kb on + strand, within Psest_0439 at 478.302 kb on - strand, within Psest_0439 at 478.302 kb on - strand, within Psest_0439 at 478.302 kb on - strand, within Psest_0439 at 478.320 kb on - strand, within Psest_0439 at 478.320 kb on - strand, within Psest_0439 at 478.398 kb on + strand, within Psest_0439 at 478.399 kb on - strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.647 kb on - strand, within Psest_0439 at 478.647 kb on - strand, within Psest_0439 at 478.647 kb on - strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.703 kb on + strand, within Psest_0439 at 478.703 kb on + strand, within Psest_0439 at 478.704 kb on - strand, within Psest_0439 at 478.704 kb on - strand, within Psest_0439 at 478.708 kb on + strand, within Psest_0439 at 478.708 kb on + strand, within Psest_0439 at 478.727 kb on - strand, within Psest_0439 at 478.917 kb on + strand at 478.918 kb on - strand at 478.918 kb on - strand at 478.969 kb on + strand at 478.969 kb on + strand at 479.043 kb on + strand at 479.043 kb on + strand at 479.044 kb on - strand at 479.044 kb on - strand at 479.044 kb on - strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.054 kb on - strand at 479.054 kb on - strand at 479.054 kb on - strand at 479.054 kb on - strand at 479.058 kb on - strand at 479.086 kb on - strand at 479.147 kb on + strand at 479.147 kb on + strand at 479.147 kb on + strand at 479.162 kb on + strand at 479.162 kb on + strand at 479.163 kb on - strand at 479.163 kb on - strand at 479.192 kb on + strand at 479.192 kb on + strand at 479.193 kb on - strand at 479.224 kb on + strand at 479.224 kb on + strand at 479.225 kb on - strand at 479.225 kb on - strand at 479.258 kb on + strand at 479.259 kb on - strand at 479.437 kb on + strand, within Psest_0440 at 479.437 kb on + strand, within Psest_0440 at 479.437 kb on + strand, within Psest_0440 at 479.437 kb on + strand, within Psest_0440 at 479.438 kb on - strand, within Psest_0440 at 479.438 kb on - strand, within Psest_0440 at 479.556 kb on + strand at 479.556 kb on + strand at 479.556 kb on + strand at 479.557 kb on - strand at 479.557 kb on - strand at 479.557 kb on - strand at 479.557 kb on - strand at 479.557 kb on - strand at 479.603 kb on + strand at 479.603 kb on + strand at 479.604 kb on - strand at 479.658 kb on - strand at 479.690 kb on + strand at 479.691 kb on - strand at 479.691 kb on - strand at 479.691 kb on - strand at 479.711 kb on + strand at 479.712 kb on - strand at 479.712 kb on - strand at 479.712 kb on - strand at 479.731 kb on + strand at 479.860 kb on + strand at 479.860 kb on + strand at 479.860 kb on + strand at 479.860 kb on + strand at 479.860 kb on + strand at 479.861 kb on - strand at 479.861 kb on - strand at 479.879 kb on + strand at 479.880 kb on - strand at 480.082 kb on - strand, within Psest_0441 at 480.129 kb on - strand, within Psest_0441 at 480.150 kb on - strand, within Psest_0441 at 480.150 kb on - strand, within Psest_0441 at 480.150 kb on - strand, within Psest_0441 at 480.231 kb on - strand, within Psest_0441 at 480.301 kb on + strand, within Psest_0441 at 480.302 kb on - strand, within Psest_0441 at 480.302 kb on - strand, within Psest_0441 at 480.302 kb on - strand, within Psest_0441 at 480.343 kb on + strand, within Psest_0441 at 480.344 kb on - strand, within Psest_0441 at 480.394 kb on - strand, within Psest_0441 at 480.405 kb on - strand, within Psest_0441 at 480.438 kb on + strand, within Psest_0441 at 480.439 kb on - strand, within Psest_0441 at 480.455 kb on + strand, within Psest_0441 at 480.455 kb on + strand, within Psest_0441 at 480.455 kb on + strand, within Psest_0441 at 480.456 kb on - strand, within Psest_0441 at 480.486 kb on + strand, within Psest_0441 at 480.486 kb on + strand, within Psest_0441 at 480.486 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.543 kb on - strand, within Psest_0441 at 480.543 kb on - strand, within Psest_0441 at 480.543 kb on - strand, within Psest_0441 at 480.543 kb on - strand, within Psest_0441 at 480.543 kb on - strand, within Psest_0441
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 0 Gy remove 478,301 + Psest_0439 0.48 +0.7 478,302 - Psest_0439 0.48 +0.2 478,302 - Psest_0439 0.48 +0.6 478,302 - Psest_0439 0.48 -0.7 478,320 - Psest_0439 0.49 -0.2 478,320 - Psest_0439 0.49 -2.9 478,398 + Psest_0439 0.54 +0.4 478,399 - Psest_0439 0.54 +0.3 478,544 + Psest_0439 0.65 +0.3 478,544 + Psest_0439 0.65 -1.1 478,544 + Psest_0439 0.65 -1.1 478,544 + Psest_0439 0.65 -0.7 478,544 + Psest_0439 0.65 +1.0 478,646 + Psest_0439 0.72 +0.2 478,646 + Psest_0439 0.72 -0.6 478,646 + Psest_0439 0.72 -1.7 478,646 + Psest_0439 0.72 +0.3 478,646 + Psest_0439 0.72 -1.2 478,647 - Psest_0439 0.72 +0.7 478,647 - Psest_0439 0.72 +1.3 478,647 - Psest_0439 0.72 +0.3 478,649 + Psest_0439 0.72 -0.3 478,649 + Psest_0439 0.72 -1.5 478,649 + Psest_0439 0.72 +0.7 478,649 + Psest_0439 0.72 +0.5 478,649 + Psest_0439 0.72 +0.8 478,649 + Psest_0439 0.72 +1.0 478,649 + Psest_0439 0.72 -0.4 478,649 + Psest_0439 0.72 -0.4 478,649 + Psest_0439 0.72 +0.9 478,649 + Psest_0439 0.72 +1.3 478,649 + Psest_0439 0.72 +0.3 478,649 + Psest_0439 0.72 +0.5 478,649 + Psest_0439 0.72 +0.8 478,649 + Psest_0439 0.72 +1.0 478,650 - Psest_0439 0.72 -0.4 478,650 - Psest_0439 0.72 -2.9 478,650 - Psest_0439 0.72 +0.6 478,650 - Psest_0439 0.72 +0.1 478,650 - Psest_0439 0.72 -0.3 478,650 - Psest_0439 0.72 -0.2 478,650 - Psest_0439 0.72 +0.9 478,650 - Psest_0439 0.72 +0.6 478,650 - Psest_0439 0.72 -0.1 478,650 - Psest_0439 0.72 -0.5 478,650 - Psest_0439 0.72 -0.5 478,650 - Psest_0439 0.72 -0.4 478,703 + Psest_0439 0.76 +0.5 478,703 + Psest_0439 0.76 -0.4 478,704 - Psest_0439 0.76 +1.0 478,704 - Psest_0439 0.76 +0.1 478,708 + Psest_0439 0.76 -0.5 478,708 + Psest_0439 0.76 +0.3 478,727 - Psest_0439 0.77 +0.2 478,917 + +0.8 478,918 - -0.7 478,918 - +0.1 478,969 + -0.4 478,969 + +1.3 479,043 + -0.7 479,043 + -1.0 479,044 - +0.9 479,044 - -0.0 479,044 - +0.0 479,053 + +0.1 479,053 + -0.3 479,053 + -0.3 479,053 + -1.7 479,053 + -0.2 479,053 + -2.3 479,053 + +1.7 479,053 + -1.4 479,053 + -2.5 479,053 + -4.1 479,053 + -2.0 479,054 - +0.3 479,054 - +0.5 479,054 - -1.7 479,054 - -2.9 479,058 - -0.1 479,086 - -1.0 479,147 + +0.1 479,147 + +0.5 479,147 + +0.4 479,162 + -0.8 479,162 + -1.1 479,163 - -0.3 479,163 - -0.7 479,192 + -1.3 479,192 + +0.4 479,193 - -0.5 479,224 + +0.1 479,224 + +0.3 479,225 - -0.6 479,225 - -0.9 479,258 + +0.8 479,259 - -0.3 479,437 + Psest_0440 0.61 -2.0 479,437 + Psest_0440 0.61 -2.5 479,437 + Psest_0440 0.61 +0.9 479,437 + Psest_0440 0.61 +0.6 479,438 - Psest_0440 0.62 -0.3 479,438 - Psest_0440 0.62 -0.2 479,556 + -0.3 479,556 + +0.1 479,556 + -1.3 479,557 - -2.5 479,557 - -0.5 479,557 - -1.2 479,557 - -1.5 479,557 - +0.5 479,603 + +1.9 479,603 + -1.0 479,604 - -0.6 479,658 - -1.3 479,690 + +0.0 479,691 - -1.8 479,691 - -0.1 479,691 - -1.1 479,711 + -1.0 479,712 - -1.1 479,712 - +1.6 479,712 - -1.2 479,731 + -0.6 479,860 + -0.1 479,860 + +1.0 479,860 + -1.1 479,860 + +0.7 479,860 + +0.0 479,861 - +0.6 479,861 - +0.1 479,879 + +0.4 479,880 - +0.2 480,082 - Psest_0441 0.14 -2.3 480,129 - Psest_0441 0.16 +0.1 480,150 - Psest_0441 0.17 +0.6 480,150 - Psest_0441 0.17 -0.7 480,150 - Psest_0441 0.17 -0.7 480,231 - Psest_0441 0.20 +0.1 480,301 + Psest_0441 0.23 -1.3 480,302 - Psest_0441 0.23 -0.5 480,302 - Psest_0441 0.23 -0.3 480,302 - Psest_0441 0.23 -1.2 480,343 + Psest_0441 0.25 -0.6 480,344 - Psest_0441 0.25 -0.2 480,394 - Psest_0441 0.27 +1.3 480,405 - Psest_0441 0.27 +0.7 480,438 + Psest_0441 0.29 -0.0 480,439 - Psest_0441 0.29 -1.1 480,455 + Psest_0441 0.30 -2.0 480,455 + Psest_0441 0.30 -0.2 480,455 + Psest_0441 0.30 -2.0 480,456 - Psest_0441 0.30 -0.6 480,486 + Psest_0441 0.31 +0.0 480,486 + Psest_0441 0.31 +0.1 480,486 + Psest_0441 0.31 +0.3 480,542 + Psest_0441 0.33 -0.6 480,542 + Psest_0441 0.33 +1.1 480,542 + Psest_0441 0.33 -0.4 480,542 + Psest_0441 0.33 -1.0 480,542 + Psest_0441 0.33 -1.5 480,542 + Psest_0441 0.33 -1.5 480,542 + Psest_0441 0.33 -0.4 480,542 + Psest_0441 0.33 -1.8 480,542 + Psest_0441 0.33 -0.7 480,542 + Psest_0441 0.33 +0.8 480,542 + Psest_0441 0.33 -2.2 480,542 + Psest_0441 0.33 +1.6 480,542 + Psest_0441 0.33 -0.5 480,542 + Psest_0441 0.33 -0.5 480,542 + Psest_0441 0.33 -3.7 480,542 + Psest_0441 0.33 -1.1 480,542 + Psest_0441 0.33 -0.3 480,542 + Psest_0441 0.33 -0.1 480,542 + Psest_0441 0.33 -0.9 480,542 + Psest_0441 0.33 +3.1 480,542 + Psest_0441 0.33 +0.8 480,542 + Psest_0441 0.33 -0.2 480,542 + Psest_0441 0.33 -0.1 480,543 - Psest_0441 0.33 -1.0 480,543 - Psest_0441 0.33 -0.4 480,543 - Psest_0441 0.33 +0.6 480,543 - Psest_0441 0.33 +1.0 480,543 - Psest_0441 0.33 -0.7
Or see this region's nucleotide sequence