Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0417

Experiment: Ionizing radiation, 0 Gy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0415 and Psest_0416 are separated by 85 nucleotidesPsest_0416 and Psest_0417 are separated by 360 nucleotidesPsest_0417 and Psest_0418 are separated by 149 nucleotides Psest_0415: Psest_0415 - dethiobiotin synthase, at 450,447 to 451,133 _0415 Psest_0416: Psest_0416 - hypothetical protein, at 451,219 to 451,467 _0416 Psest_0417: Psest_0417 - Acyl-CoA dehydrogenases, at 451,828 to 453,633 _0417 Psest_0418: Psest_0418 - diguanylate cyclase (GGDEF) domain, at 453,783 to 455,072 _0418 Position (kb) 451 452 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 450.837 kb on + strand, within Psest_0415at 450.837 kb on + strand, within Psest_0415at 450.837 kb on + strand, within Psest_0415at 450.838 kb on - strand, within Psest_0415at 450.922 kb on + strand, within Psest_0415at 450.922 kb on + strand, within Psest_0415at 450.923 kb on - strand, within Psest_0415at 450.923 kb on - strand, within Psest_0415at 450.923 kb on - strand, within Psest_0415at 450.923 kb on - strand, within Psest_0415at 451.233 kb on + strandat 451.261 kb on + strand, within Psest_0416at 451.261 kb on + strand, within Psest_0416at 451.261 kb on + strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.262 kb on - strand, within Psest_0416at 451.633 kb on - strandat 451.633 kb on - strandat 451.633 kb on - strandat 451.633 kb on - strandat 451.671 kb on + strandat 451.671 kb on + strandat 451.672 kb on - strandat 451.672 kb on - strandat 451.713 kb on + strandat 451.713 kb on + strandat 451.713 kb on + strandat 451.809 kb on + strandat 451.822 kb on + strandat 451.837 kb on + strandat 451.837 kb on + strandat 451.838 kb on - strandat 451.868 kb on + strandat 451.868 kb on + strandat 451.869 kb on - strandat 451.889 kb on - strandat 451.901 kb on - strandat 452.275 kb on + strand, within Psest_0417at 452.275 kb on + strand, within Psest_0417at 452.392 kb on + strand, within Psest_0417at 452.393 kb on - strand, within Psest_0417at 452.393 kb on - strand, within Psest_0417at 452.920 kb on + strand, within Psest_0417at 453.071 kb on + strand, within Psest_0417at 453.073 kb on + strand, within Psest_0417at 453.073 kb on + strand, within Psest_0417at 453.074 kb on - strand, within Psest_0417at 453.145 kb on + strand, within Psest_0417at 453.145 kb on + strand, within Psest_0417at 453.394 kb on + strand, within Psest_0417at 453.403 kb on + strand, within Psest_0417at 453.526 kb on + strandat 453.648 kb on - strandat 453.766 kb on - strandat 453.897 kb on + strandat 453.897 kb on + strandat 453.897 kb on + strandat 453.897 kb on + strandat 453.897 kb on + strandat 453.898 kb on - strandat 453.898 kb on - strandat 453.898 kb on - strandat 453.898 kb on - strandat 453.917 kb on - strand, within Psest_0418at 453.952 kb on - strand, within Psest_0418at 453.952 kb on - strand, within Psest_0418at 453.952 kb on - strand, within Psest_0418at 453.952 kb on - strand, within Psest_0418at 453.991 kb on - strand, within Psest_0418at 453.999 kb on + strand, within Psest_0418at 453.999 kb on + strand, within Psest_0418at 453.999 kb on + strand, within Psest_0418at 453.999 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.027 kb on - strand, within Psest_0418at 454.030 kb on - strand, within Psest_0418at 454.341 kb on + strand, within Psest_0418at 454.342 kb on - strand, within Psest_0418at 454.497 kb on + strand, within Psest_0418at 454.497 kb on + strand, within Psest_0418at 454.497 kb on + strand, within Psest_0418at 454.497 kb on + strand, within Psest_0418at 454.498 kb on - strand, within Psest_0418at 454.582 kb on - strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 0 Gy
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450,837 + Psest_0415 0.57 -1.7
450,837 + Psest_0415 0.57 +0.5
450,837 + Psest_0415 0.57 -0.2
450,838 - Psest_0415 0.57 +0.2
450,922 + Psest_0415 0.69 -0.0
450,922 + Psest_0415 0.69 -0.4
450,923 - Psest_0415 0.69 +1.9
450,923 - Psest_0415 0.69 -0.7
450,923 - Psest_0415 0.69 -0.8
450,923 - Psest_0415 0.69 -0.3
451,233 + -0.4
451,261 + Psest_0416 0.17 -0.4
451,261 + Psest_0416 0.17 -2.0
451,261 + Psest_0416 0.17 -0.5
451,262 - Psest_0416 0.17 +0.2
451,262 - Psest_0416 0.17 +0.3
451,262 - Psest_0416 0.17 +0.4
451,262 - Psest_0416 0.17 -1.3
451,262 - Psest_0416 0.17 +0.1
451,262 - Psest_0416 0.17 -0.9
451,262 - Psest_0416 0.17 -0.7
451,633 - +0.1
451,633 - -1.2
451,633 - -1.3
451,633 - -1.7
451,671 + -0.2
451,671 + -0.3
451,672 - +0.2
451,672 - +0.1
451,713 + -1.1
451,713 + +0.5
451,713 + -0.2
451,809 + -0.4
451,822 + +0.9
451,837 + +0.3
451,837 + -2.5
451,838 - +0.3
451,868 + +3.5
451,868 + +1.3
451,869 - +0.7
451,889 - +0.3
451,901 - +0.6
452,275 + Psest_0417 0.25 -1.0
452,275 + Psest_0417 0.25 -1.7
452,392 + Psest_0417 0.31 +0.3
452,393 - Psest_0417 0.31 -0.7
452,393 - Psest_0417 0.31 +0.7
452,920 + Psest_0417 0.60 +0.3
453,071 + Psest_0417 0.69 +0.9
453,073 + Psest_0417 0.69 +1.3
453,073 + Psest_0417 0.69 +2.3
453,074 - Psest_0417 0.69 +2.3
453,145 + Psest_0417 0.73 +0.3
453,145 + Psest_0417 0.73 -0.1
453,394 + Psest_0417 0.87 +1.3
453,403 + Psest_0417 0.87 -0.7
453,526 + -1.3
453,648 - +0.8
453,766 - -0.7
453,897 + -2.0
453,897 + +1.3
453,897 + -0.4
453,897 + +0.7
453,897 + -0.7
453,898 - +1.1
453,898 - +1.0
453,898 - +0.5
453,898 - +0.7
453,917 - Psest_0418 0.10 +0.1
453,952 - Psest_0418 0.13 -0.5
453,952 - Psest_0418 0.13 -1.8
453,952 - Psest_0418 0.13 -0.0
453,952 - Psest_0418 0.13 +1.6
453,991 - Psest_0418 0.16 -0.7
453,999 + Psest_0418 0.17 -1.3
453,999 + Psest_0418 0.17 +0.2
453,999 + Psest_0418 0.17 +0.7
453,999 + Psest_0418 0.17 -0.3
454,026 + Psest_0418 0.19 -2.3
454,026 + Psest_0418 0.19 -1.1
454,026 + Psest_0418 0.19 -0.4
454,026 + Psest_0418 0.19 -0.1
454,026 + Psest_0418 0.19 +1.2
454,027 - Psest_0418 0.19 +1.5
454,030 - Psest_0418 0.19 +1.3
454,341 + Psest_0418 0.43 -0.7
454,342 - Psest_0418 0.43 -0.2
454,497 + Psest_0418 0.55 -1.3
454,497 + Psest_0418 0.55 -0.5
454,497 + Psest_0418 0.55 -0.8
454,497 + Psest_0418 0.55 +0.7
454,498 - Psest_0418 0.55 +0.3
454,582 - Psest_0418 0.62 -1.0
454,632 + Psest_0418 0.66 -1.1
454,632 + Psest_0418 0.66 +0.1
454,632 + Psest_0418 0.66 -1.3
454,632 + Psest_0418 0.66 +0.6
454,632 + Psest_0418 0.66 -0.5
454,632 + Psest_0418 0.66 -0.4
454,632 + Psest_0418 0.66 -1.1
454,632 + Psest_0418 0.66 -2.9
454,632 + Psest_0418 0.66 +0.1
454,632 + Psest_0418 0.66 +1.2
454,633 - Psest_0418 0.66 -1.2
454,633 - Psest_0418 0.66 -0.4
454,633 - Psest_0418 0.66 -1.5
454,633 - Psest_0418 0.66 -0.1
454,633 - Psest_0418 0.66 +0.1
454,633 - Psest_0418 0.66 +0.3
454,633 - Psest_0418 0.66 -1.6
454,633 - Psest_0418 0.66 +0.9
454,633 - Psest_0418 0.66 -0.1
454,633 - Psest_0418 0.66 -1.2

Or see this region's nucleotide sequence