Experiment: Ionizing radiation, 0 Gy
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0333 and Psest_0334 are separated by 60 nucleotides Psest_0334 and Psest_0335 are separated by 319 nucleotides Psest_0335 and Psest_0336 are separated by 177 nucleotides Psest_0336 and Psest_0337 are separated by 92 nucleotides
Psest_0333: Psest_0333 - fructose-bisphosphate aldolase, class II, Calvin cycle subtype, at 356,117 to 357,181
_0333
Psest_0334: Psest_0334 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 357,242 to 357,622
_0334
Psest_0335: Psest_0335 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 357,942 to 358,556
_0335
Psest_0336: Psest_0336 - Protein of unknown function (DUF3509)., at 358,734 to 359,012
_0336
Psest_0337: Psest_0337 - Regulator of cell morphogenesis and NO signaling, at 359,105 to 359,578
_0337
Position (kb) 357
358
359 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 357.193 kb on - strand at 357.342 kb on + strand, within Psest_0334 at 357.342 kb on + strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.571 kb on + strand, within Psest_0334 at 357.572 kb on - strand, within Psest_0334 at 357.642 kb on + strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.812 kb on + strand at 357.812 kb on + strand at 357.813 kb on - strand at 357.813 kb on - strand at 357.827 kb on - strand at 357.925 kb on + strand at 357.925 kb on + strand at 357.925 kb on + strand at 357.925 kb on + strand at 357.926 kb on - strand at 357.926 kb on - strand at 357.926 kb on - strand at 357.981 kb on + strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.984 kb on + strand at 357.985 kb on - strand at 358.156 kb on + strand, within Psest_0335 at 358.312 kb on + strand, within Psest_0335 at 358.312 kb on + strand, within Psest_0335 at 358.312 kb on + strand, within Psest_0335 at 358.428 kb on + strand, within Psest_0335 at 358.429 kb on - strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.431 kb on - strand, within Psest_0335 at 358.431 kb on - strand, within Psest_0335 at 358.431 kb on - strand, within Psest_0335 at 358.431 kb on - strand, within Psest_0335 at 358.449 kb on - strand, within Psest_0335 at 358.449 kb on - strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.489 kb on - strand, within Psest_0335 at 358.489 kb on - strand, within Psest_0335 at 358.489 kb on - strand, within Psest_0335 at 358.717 kb on + strand at 358.717 kb on + strand at 358.718 kb on - strand at 358.718 kb on - strand at 358.718 kb on - strand at 358.718 kb on - strand at 358.757 kb on + strand at 358.994 kb on + strand at 358.995 kb on - strand at 358.995 kb on - strand at 358.998 kb on + strand at 358.998 kb on + strand at 358.998 kb on + strand at 358.999 kb on - strand at 358.999 kb on - strand at 358.999 kb on - strand at 358.999 kb on - strand at 358.999 kb on - strand at 358.999 kb on - strand at 358.999 kb on - strand at 359.005 kb on - strand at 359.201 kb on - strand, within Psest_0337 at 359.237 kb on - strand, within Psest_0337 at 359.276 kb on + strand, within Psest_0337 at 359.276 kb on + strand, within Psest_0337 at 359.276 kb on + strand, within Psest_0337 at 359.276 kb on + strand, within Psest_0337 at 359.276 kb on + strand, within Psest_0337 at 359.276 kb on + strand, within Psest_0337 at 359.277 kb on - strand, within Psest_0337 at 359.277 kb on - strand, within Psest_0337 at 359.312 kb on + strand, within Psest_0337 at 359.312 kb on + strand, within Psest_0337 at 359.313 kb on - strand, within Psest_0337 at 359.313 kb on - strand, within Psest_0337 at 359.313 kb on - strand, within Psest_0337 at 359.313 kb on - strand, within Psest_0337
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 0 Gy remove 357,193 - +0.2 357,342 + Psest_0334 0.26 -1.1 357,342 + Psest_0334 0.26 -1.9 357,343 - Psest_0334 0.27 -0.7 357,343 - Psest_0334 0.27 -1.0 357,343 - Psest_0334 0.27 -2.6 357,343 - Psest_0334 0.27 -1.8 357,571 + Psest_0334 0.86 -0.7 357,572 - Psest_0334 0.87 -1.3 357,642 + +0.1 357,643 - +3.8 357,643 - +2.6 357,643 - +2.9 357,643 - +3.2 357,643 - +2.9 357,812 + +0.1 357,812 + +0.5 357,813 - +2.0 357,813 - +2.0 357,827 - +1.9 357,925 + -0.7 357,925 + -0.6 357,925 + -1.5 357,925 + -0.4 357,926 - +2.3 357,926 - +1.5 357,926 - +2.1 357,981 + +1.6 357,982 - +2.5 357,982 - +1.4 357,982 - +0.7 357,982 - +2.2 357,982 - +2.0 357,984 + -0.6 357,985 - +2.8 358,156 + Psest_0335 0.35 -1.6 358,312 + Psest_0335 0.60 -1.5 358,312 + Psest_0335 0.60 +0.8 358,312 + Psest_0335 0.60 +1.3 358,428 + Psest_0335 0.79 -0.6 358,429 - Psest_0335 0.79 +0.3 358,430 + Psest_0335 0.79 +0.3 358,430 + Psest_0335 0.79 +0.2 358,430 + Psest_0335 0.79 -0.1 358,430 + Psest_0335 0.79 -0.1 358,430 + Psest_0335 0.79 -0.4 358,430 + Psest_0335 0.79 -1.9 358,431 - Psest_0335 0.80 +0.7 358,431 - Psest_0335 0.80 +1.1 358,431 - Psest_0335 0.80 -0.1 358,431 - Psest_0335 0.80 +0.3 358,449 - Psest_0335 0.82 +0.0 358,449 - Psest_0335 0.82 -0.2 358,488 + Psest_0335 0.89 -0.9 358,488 + Psest_0335 0.89 -2.5 358,488 + Psest_0335 0.89 -1.1 358,488 + Psest_0335 0.89 -0.3 358,488 + Psest_0335 0.89 +0.8 358,488 + Psest_0335 0.89 -1.6 358,488 + Psest_0335 0.89 +0.3 358,489 - Psest_0335 0.89 +1.2 358,489 - Psest_0335 0.89 -0.0 358,489 - Psest_0335 0.89 -0.6 358,717 + +0.4 358,717 + -1.7 358,718 - +2.6 358,718 - +0.2 358,718 - +0.8 358,718 - +1.8 358,757 + +0.3 358,994 + -0.6 358,995 - -0.3 358,995 - -0.7 358,998 + -0.7 358,998 + +1.2 358,998 + -1.4 358,999 - -0.1 358,999 - -2.7 358,999 - -0.7 358,999 - +1.1 358,999 - +1.1 358,999 - +1.1 358,999 - -1.5 359,005 - -0.6 359,201 - Psest_0337 0.20 +0.4 359,237 - Psest_0337 0.28 +1.0 359,276 + Psest_0337 0.36 +0.3 359,276 + Psest_0337 0.36 -0.2 359,276 + Psest_0337 0.36 +0.5 359,276 + Psest_0337 0.36 +1.3 359,276 + Psest_0337 0.36 -0.5 359,276 + Psest_0337 0.36 -0.8 359,277 - Psest_0337 0.36 -0.0 359,277 - Psest_0337 0.36 -0.1 359,312 + Psest_0337 0.44 +0.6 359,312 + Psest_0337 0.44 +2.3 359,313 - Psest_0337 0.44 +2.5 359,313 - Psest_0337 0.44 +0.2 359,313 - Psest_0337 0.44 -0.7 359,313 - Psest_0337 0.44 +0.2
Or see this region's nucleotide sequence