Experiment: Ionizing radiation, 0 Gy
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3038 and Psest_3039 are separated by 198 nucleotides Psest_3039 and Psest_3040 are separated by 49 nucleotides Psest_3040 and Psest_3041 overlap by 1 nucleotides
Psest_3038: Psest_3038 - Arabinose efflux permease, at 3,221,247 to 3,222,425
_3038
Psest_3039: Psest_3039 - periplasmic nitrate reductase, NapE protein, at 3,222,624 to 3,222,803
_3039
Psest_3040: Psest_3040 - Uncharacterized protein involved in formation of periplasmic nitrate reductase, at 3,222,853 to 3,223,107
_3040
Psest_3041: Psest_3041 - periplasmic nitrate reductase, large subunit, at 3,223,107 to 3,225,611
_3041
Position (kb)
3222
3223
3224 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3221.988 kb on - strand, within Psest_3038 at 3221.989 kb on + strand, within Psest_3038 at 3221.989 kb on + strand, within Psest_3038 at 3221.989 kb on + strand, within Psest_3038 at 3221.989 kb on + strand, within Psest_3038 at 3221.989 kb on + strand, within Psest_3038 at 3221.989 kb on + strand, within Psest_3038 at 3221.989 kb on + strand, within Psest_3038 at 3221.989 kb on + strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3221.990 kb on - strand, within Psest_3038 at 3222.040 kb on + strand, within Psest_3038 at 3222.040 kb on + strand, within Psest_3038 at 3222.040 kb on + strand, within Psest_3038 at 3222.041 kb on - strand, within Psest_3038 at 3222.041 kb on - strand, within Psest_3038 at 3222.041 kb on - strand, within Psest_3038 at 3222.041 kb on - strand, within Psest_3038 at 3222.041 kb on - strand, within Psest_3038 at 3222.041 kb on - strand, within Psest_3038 at 3222.216 kb on - strand, within Psest_3038 at 3222.326 kb on - strand at 3222.326 kb on - strand at 3222.326 kb on - strand at 3222.326 kb on - strand at 3222.383 kb on - strand at 3222.534 kb on + strand at 3222.592 kb on + strand at 3222.659 kb on + strand, within Psest_3039 at 3222.659 kb on + strand, within Psest_3039 at 3222.660 kb on - strand, within Psest_3039 at 3222.837 kb on - strand at 3222.847 kb on + strand at 3222.848 kb on - strand at 3222.917 kb on + strand, within Psest_3040 at 3222.935 kb on + strand, within Psest_3040 at 3222.935 kb on + strand, within Psest_3040 at 3222.935 kb on + strand, within Psest_3040 at 3222.935 kb on + strand, within Psest_3040 at 3222.935 kb on + strand, within Psest_3040 at 3222.935 kb on + strand, within Psest_3040 at 3222.936 kb on - strand, within Psest_3040 at 3223.060 kb on - strand, within Psest_3040 at 3223.060 kb on - strand, within Psest_3040 at 3223.060 kb on - strand, within Psest_3040 at 3223.060 kb on - strand, within Psest_3040 at 3223.075 kb on + strand, within Psest_3040 at 3223.076 kb on - strand, within Psest_3040 at 3223.076 kb on - strand, within Psest_3040 at 3223.153 kb on + strand at 3223.154 kb on - strand at 3223.154 kb on - strand at 3223.365 kb on + strand, within Psest_3041 at 3223.366 kb on - strand, within Psest_3041 at 3223.366 kb on - strand, within Psest_3041 at 3223.366 kb on - strand, within Psest_3041 at 3223.366 kb on - strand, within Psest_3041 at 3223.386 kb on + strand, within Psest_3041 at 3223.387 kb on - strand, within Psest_3041 at 3223.387 kb on - strand, within Psest_3041 at 3223.417 kb on + strand, within Psest_3041 at 3223.417 kb on + strand, within Psest_3041 at 3223.417 kb on + strand, within Psest_3041 at 3223.503 kb on + strand, within Psest_3041 at 3223.503 kb on + strand, within Psest_3041 at 3223.503 kb on + strand, within Psest_3041 at 3223.503 kb on + strand, within Psest_3041 at 3223.504 kb on - strand, within Psest_3041 at 3223.504 kb on - strand, within Psest_3041 at 3223.504 kb on - strand, within Psest_3041 at 3223.504 kb on - strand, within Psest_3041 at 3223.504 kb on - strand, within Psest_3041 at 3223.710 kb on + strand, within Psest_3041 at 3223.710 kb on + strand, within Psest_3041 at 3223.711 kb on - strand, within Psest_3041 at 3223.920 kb on + strand, within Psest_3041 at 3223.920 kb on + strand, within Psest_3041 at 3223.920 kb on + strand, within Psest_3041 at 3223.920 kb on + strand, within Psest_3041 at 3223.920 kb on + strand, within Psest_3041 at 3223.920 kb on + strand, within Psest_3041 at 3223.920 kb on + strand, within Psest_3041 at 3223.921 kb on - strand, within Psest_3041 at 3223.921 kb on - strand, within Psest_3041 at 3223.921 kb on - strand, within Psest_3041 at 3223.921 kb on - strand, within Psest_3041 at 3223.921 kb on - strand, within Psest_3041 at 3223.921 kb on - strand, within Psest_3041 at 3224.101 kb on - strand, within Psest_3041 at 3224.101 kb on - strand, within Psest_3041
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 0 Gy remove 3,221,988 - Psest_3038 0.63 +0.7 3,221,989 + Psest_3038 0.63 +0.6 3,221,989 + Psest_3038 0.63 +0.0 3,221,989 + Psest_3038 0.63 +0.2 3,221,989 + Psest_3038 0.63 +3.3 3,221,989 + Psest_3038 0.63 +0.3 3,221,989 + Psest_3038 0.63 +0.6 3,221,989 + Psest_3038 0.63 -1.1 3,221,989 + Psest_3038 0.63 +2.7 3,221,990 - Psest_3038 0.63 +1.3 3,221,990 - Psest_3038 0.63 +1.3 3,221,990 - Psest_3038 0.63 -0.5 3,221,990 - Psest_3038 0.63 -1.4 3,221,990 - Psest_3038 0.63 -0.3 3,221,990 - Psest_3038 0.63 -1.7 3,221,990 - Psest_3038 0.63 -2.3 3,221,990 - Psest_3038 0.63 -2.5 3,221,990 - Psest_3038 0.63 -0.9 3,221,990 - Psest_3038 0.63 -1.1 3,221,990 - Psest_3038 0.63 -0.8 3,221,990 - Psest_3038 0.63 -1.0 3,221,990 - Psest_3038 0.63 -0.1 3,221,990 - Psest_3038 0.63 +0.0 3,222,040 + Psest_3038 0.67 +0.7 3,222,040 + Psest_3038 0.67 -0.1 3,222,040 + Psest_3038 0.67 -0.5 3,222,041 - Psest_3038 0.67 -0.6 3,222,041 - Psest_3038 0.67 -0.1 3,222,041 - Psest_3038 0.67 -2.1 3,222,041 - Psest_3038 0.67 +0.3 3,222,041 - Psest_3038 0.67 -0.1 3,222,041 - Psest_3038 0.67 -0.5 3,222,216 - Psest_3038 0.82 -0.5 3,222,326 - +0.5 3,222,326 - -0.3 3,222,326 - -2.1 3,222,326 - -0.2 3,222,383 - +0.6 3,222,534 + -0.3 3,222,592 + -0.7 3,222,659 + Psest_3039 0.19 -3.2 3,222,659 + Psest_3039 0.19 -1.7 3,222,660 - Psest_3039 0.20 +0.3 3,222,837 - +0.5 3,222,847 + +0.0 3,222,848 - +0.1 3,222,917 + Psest_3040 0.25 -0.5 3,222,935 + Psest_3040 0.32 +0.3 3,222,935 + Psest_3040 0.32 -0.3 3,222,935 + Psest_3040 0.32 -3.2 3,222,935 + Psest_3040 0.32 +1.8 3,222,935 + Psest_3040 0.32 -0.4 3,222,935 + Psest_3040 0.32 -1.0 3,222,936 - Psest_3040 0.33 +1.0 3,223,060 - Psest_3040 0.81 -0.5 3,223,060 - Psest_3040 0.81 +0.3 3,223,060 - Psest_3040 0.81 +0.1 3,223,060 - Psest_3040 0.81 -1.5 3,223,075 + Psest_3040 0.87 -0.6 3,223,076 - Psest_3040 0.87 +1.8 3,223,076 - Psest_3040 0.87 -0.5 3,223,153 + +1.4 3,223,154 - +0.8 3,223,154 - -0.1 3,223,365 + Psest_3041 0.10 -1.2 3,223,366 - Psest_3041 0.10 -1.3 3,223,366 - Psest_3041 0.10 +0.3 3,223,366 - Psest_3041 0.10 -1.1 3,223,366 - Psest_3041 0.10 -0.3 3,223,386 + Psest_3041 0.11 -0.7 3,223,387 - Psest_3041 0.11 +0.1 3,223,387 - Psest_3041 0.11 +0.2 3,223,417 + Psest_3041 0.12 +0.1 3,223,417 + Psest_3041 0.12 -0.5 3,223,417 + Psest_3041 0.12 -1.7 3,223,503 + Psest_3041 0.16 +0.9 3,223,503 + Psest_3041 0.16 -0.1 3,223,503 + Psest_3041 0.16 +0.1 3,223,503 + Psest_3041 0.16 -0.6 3,223,504 - Psest_3041 0.16 +0.6 3,223,504 - Psest_3041 0.16 +0.7 3,223,504 - Psest_3041 0.16 -0.3 3,223,504 - Psest_3041 0.16 +0.6 3,223,504 - Psest_3041 0.16 -0.6 3,223,710 + Psest_3041 0.24 +0.6 3,223,710 + Psest_3041 0.24 +0.3 3,223,711 - Psest_3041 0.24 +1.5 3,223,920 + Psest_3041 0.32 +0.4 3,223,920 + Psest_3041 0.32 -0.3 3,223,920 + Psest_3041 0.32 +0.3 3,223,920 + Psest_3041 0.32 -1.8 3,223,920 + Psest_3041 0.32 -0.2 3,223,920 + Psest_3041 0.32 +1.4 3,223,920 + Psest_3041 0.32 +0.1 3,223,921 - Psest_3041 0.32 +0.5 3,223,921 - Psest_3041 0.32 -0.3 3,223,921 - Psest_3041 0.32 +0.3 3,223,921 - Psest_3041 0.32 +1.9 3,223,921 - Psest_3041 0.32 -2.9 3,223,921 - Psest_3041 0.32 -0.3 3,224,101 - Psest_3041 0.40 +1.3 3,224,101 - Psest_3041 0.40 -0.7
Or see this region's nucleotide sequence