Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0272

Experiment: Ionizing radiation, 0 Gy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0271 and Psest_0272 are separated by 52 nucleotidesPsest_0272 and Psest_0273 are separated by 94 nucleotides Psest_0271: Psest_0271 - ornithine carbamoyltransferase, at 287,081 to 288,091 _0271 Psest_0272: Psest_0272 - arginine deiminase, at 288,144 to 289,397 _0272 Psest_0273: Psest_0273 - arginine/ornithine antiporter, at 289,492 to 290,919 _0273 Position (kb) 288 289 290Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 287.174 kb on + strandat 287.174 kb on + strandat 287.175 kb on - strandat 287.214 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.393 kb on + strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.394 kb on - strand, within Psest_0271at 287.582 kb on - strand, within Psest_0271at 287.611 kb on - strand, within Psest_0271at 287.616 kb on + strand, within Psest_0271at 287.616 kb on + strand, within Psest_0271at 287.617 kb on - strand, within Psest_0271at 287.617 kb on - strand, within Psest_0271at 287.691 kb on + strand, within Psest_0271at 287.692 kb on - strand, within Psest_0271at 287.692 kb on - strand, within Psest_0271at 287.772 kb on + strand, within Psest_0271at 287.773 kb on - strand, within Psest_0271at 287.773 kb on - strand, within Psest_0271at 287.788 kb on - strand, within Psest_0271at 287.788 kb on - strand, within Psest_0271at 287.788 kb on - strand, within Psest_0271at 287.861 kb on - strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.862 kb on + strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.863 kb on - strand, within Psest_0271at 287.985 kb on + strand, within Psest_0271at 287.985 kb on + strand, within Psest_0271at 287.985 kb on + strand, within Psest_0271at 287.985 kb on + strand, within Psest_0271at 287.985 kb on + strand, within Psest_0271at 287.986 kb on - strand, within Psest_0271at 287.986 kb on - strand, within Psest_0271at 287.986 kb on - strand, within Psest_0271at 288.024 kb on + strandat 288.079 kb on + strandat 288.148 kb on + strandat 288.149 kb on - strandat 288.230 kb on + strandat 288.358 kb on + strand, within Psest_0272at 288.358 kb on + strand, within Psest_0272at 288.358 kb on + strand, within Psest_0272at 288.359 kb on - strand, within Psest_0272at 288.359 kb on - strand, within Psest_0272at 288.359 kb on - strand, within Psest_0272at 288.359 kb on - strand, within Psest_0272at 288.359 kb on - strand, within Psest_0272at 288.814 kb on + strand, within Psest_0272at 288.814 kb on + strand, within Psest_0272at 288.887 kb on - strand, within Psest_0272at 288.887 kb on - strand, within Psest_0272at 288.887 kb on - strand, within Psest_0272at 288.961 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.080 kb on + strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.081 kb on - strand, within Psest_0272at 289.341 kb on + strandat 289.341 kb on + strandat 289.341 kb on + strandat 289.341 kb on + strandat 289.341 kb on + strandat 289.402 kb on + strandat 289.402 kb on + strandat 289.403 kb on - strandat 289.403 kb on - strandat 289.403 kb on - strandat 289.474 kb on + strandat 289.514 kb on + strandat 289.514 kb on + strandat 289.515 kb on - strandat 289.515 kb on - strandat 289.515 kb on - strandat 289.543 kb on + strandat 289.544 kb on - strandat 289.640 kb on + strand, within Psest_0273at 289.640 kb on + strand, within Psest_0273at 289.640 kb on + strand, within Psest_0273at 289.660 kb on + strand, within Psest_0273at 289.660 kb on + strand, within Psest_0273at 289.660 kb on + strand, within Psest_0273at 289.660 kb on + strand, within Psest_0273at 289.660 kb on + strand, within Psest_0273at 289.660 kb on + strand, within Psest_0273at 289.661 kb on - strand, within Psest_0273at 289.661 kb on - strand, within Psest_0273at 289.661 kb on - strand, within Psest_0273at 289.661 kb on - strand, within Psest_0273at 289.661 kb on - strand, within Psest_0273at 289.664 kb on + strand, within Psest_0273at 289.664 kb on + strand, within Psest_0273at 289.664 kb on + strand, within Psest_0273at 289.665 kb on - strand, within Psest_0273at 289.665 kb on - strand, within Psest_0273at 289.665 kb on - strand, within Psest_0273at 289.665 kb on - strand, within Psest_0273at 289.665 kb on - strand, within Psest_0273at 289.665 kb on - strand, within Psest_0273at 289.665 kb on - strand, within Psest_0273at 289.682 kb on + strand, within Psest_0273at 289.683 kb on - strand, within Psest_0273at 289.700 kb on + strand, within Psest_0273at 289.701 kb on - strand, within Psest_0273at 289.761 kb on - strand, within Psest_0273at 289.811 kb on + strand, within Psest_0273at 289.812 kb on - strand, within Psest_0273at 289.841 kb on + strand, within Psest_0273at 289.841 kb on + strand, within Psest_0273at 289.856 kb on + strand, within Psest_0273at 289.856 kb on + strand, within Psest_0273at 289.856 kb on + strand, within Psest_0273at 290.290 kb on + strand, within Psest_0273at 290.342 kb on - strand, within Psest_0273at 290.342 kb on - strand, within Psest_0273

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 0 Gy
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287,174 + -0.1
287,174 + +0.9
287,175 - -2.0
287,214 + Psest_0271 0.13 +1.1
287,393 + Psest_0271 0.31 +0.5
287,393 + Psest_0271 0.31 +0.5
287,393 + Psest_0271 0.31 -1.3
287,393 + Psest_0271 0.31 +0.1
287,393 + Psest_0271 0.31 -0.3
287,393 + Psest_0271 0.31 +0.3
287,393 + Psest_0271 0.31 -1.5
287,393 + Psest_0271 0.31 -1.3
287,393 + Psest_0271 0.31 -0.5
287,394 - Psest_0271 0.31 +0.9
287,394 - Psest_0271 0.31 -3.5
287,394 - Psest_0271 0.31 -0.1
287,394 - Psest_0271 0.31 +0.3
287,394 - Psest_0271 0.31 +1.1
287,394 - Psest_0271 0.31 -0.8
287,394 - Psest_0271 0.31 -0.9
287,394 - Psest_0271 0.31 -1.0
287,394 - Psest_0271 0.31 +3.1
287,582 - Psest_0271 0.50 -1.3
287,611 - Psest_0271 0.52 -0.5
287,616 + Psest_0271 0.53 -2.3
287,616 + Psest_0271 0.53 -0.3
287,617 - Psest_0271 0.53 +0.0
287,617 - Psest_0271 0.53 +0.1
287,691 + Psest_0271 0.60 +0.1
287,692 - Psest_0271 0.60 -0.8
287,692 - Psest_0271 0.60 +0.3
287,772 + Psest_0271 0.68 +0.5
287,773 - Psest_0271 0.68 -1.5
287,773 - Psest_0271 0.68 +0.2
287,788 - Psest_0271 0.70 -0.3
287,788 - Psest_0271 0.70 -1.7
287,788 - Psest_0271 0.70 -0.1
287,861 - Psest_0271 0.77 -1.7
287,862 + Psest_0271 0.77 +0.4
287,862 + Psest_0271 0.77 +0.9
287,862 + Psest_0271 0.77 -0.4
287,862 + Psest_0271 0.77 +0.3
287,862 + Psest_0271 0.77 +1.1
287,862 + Psest_0271 0.77 +1.9
287,862 + Psest_0271 0.77 -0.2
287,862 + Psest_0271 0.77 -0.8
287,862 + Psest_0271 0.77 -1.6
287,862 + Psest_0271 0.77 +0.0
287,862 + Psest_0271 0.77 +0.2
287,863 - Psest_0271 0.77 -0.0
287,863 - Psest_0271 0.77 -3.3
287,863 - Psest_0271 0.77 -1.7
287,863 - Psest_0271 0.77 -0.3
287,863 - Psest_0271 0.77 +0.1
287,863 - Psest_0271 0.77 -1.0
287,863 - Psest_0271 0.77 +0.4
287,863 - Psest_0271 0.77 +0.8
287,863 - Psest_0271 0.77 -1.0
287,863 - Psest_0271 0.77 +0.2
287,985 + Psest_0271 0.89 +1.5
287,985 + Psest_0271 0.89 -0.9
287,985 + Psest_0271 0.89 -0.9
287,985 + Psest_0271 0.89 +0.9
287,985 + Psest_0271 0.89 +0.1
287,986 - Psest_0271 0.90 +2.3
287,986 - Psest_0271 0.90 -0.2
287,986 - Psest_0271 0.90 -1.1
288,024 + +0.9
288,079 + -0.1
288,148 + -1.4
288,149 - +1.3
288,230 + -1.9
288,358 + Psest_0272 0.17 +0.9
288,358 + Psest_0272 0.17 +0.3
288,358 + Psest_0272 0.17 -0.6
288,359 - Psest_0272 0.17 +0.3
288,359 - Psest_0272 0.17 -0.3
288,359 - Psest_0272 0.17 -1.3
288,359 - Psest_0272 0.17 +0.2
288,359 - Psest_0272 0.17 -0.7
288,814 + Psest_0272 0.53 -0.8
288,814 + Psest_0272 0.53 +1.1
288,887 - Psest_0272 0.59 -1.4
288,887 - Psest_0272 0.59 -0.7
288,887 - Psest_0272 0.59 -3.0
288,961 + Psest_0272 0.65 -1.7
289,080 + Psest_0272 0.75 -1.8
289,080 + Psest_0272 0.75 -1.2
289,080 + Psest_0272 0.75 -1.3
289,080 + Psest_0272 0.75 -0.2
289,080 + Psest_0272 0.75 -0.8
289,080 + Psest_0272 0.75 -1.7
289,080 + Psest_0272 0.75 -0.3
289,081 - Psest_0272 0.75 +0.7
289,081 - Psest_0272 0.75 -0.0
289,081 - Psest_0272 0.75 -0.1
289,081 - Psest_0272 0.75 -1.1
289,081 - Psest_0272 0.75 -1.5
289,081 - Psest_0272 0.75 +0.4
289,081 - Psest_0272 0.75 +0.3
289,081 - Psest_0272 0.75 -1.3
289,341 + -0.9
289,341 + -0.7
289,341 + +1.6
289,341 + -0.3
289,341 + -0.0
289,402 + -1.3
289,402 + +0.6
289,403 - -0.1
289,403 - +0.5
289,403 - +0.3
289,474 + +2.3
289,514 + -0.1
289,514 + +0.4
289,515 - -1.7
289,515 - -1.3
289,515 - -0.1
289,543 + -1.5
289,544 - -1.7
289,640 + Psest_0273 0.10 -1.5
289,640 + Psest_0273 0.10 +1.4
289,640 + Psest_0273 0.10 -0.7
289,660 + Psest_0273 0.12 +1.4
289,660 + Psest_0273 0.12 -0.0
289,660 + Psest_0273 0.12 -1.2
289,660 + Psest_0273 0.12 +0.8
289,660 + Psest_0273 0.12 -0.2
289,660 + Psest_0273 0.12 -0.7
289,661 - Psest_0273 0.12 +0.3
289,661 - Psest_0273 0.12 -0.5
289,661 - Psest_0273 0.12 +0.9
289,661 - Psest_0273 0.12 -0.2
289,661 - Psest_0273 0.12 -0.1
289,664 + Psest_0273 0.12 -1.3
289,664 + Psest_0273 0.12 +2.6
289,664 + Psest_0273 0.12 -0.0
289,665 - Psest_0273 0.12 +0.3
289,665 - Psest_0273 0.12 +0.3
289,665 - Psest_0273 0.12 +0.8
289,665 - Psest_0273 0.12 -2.5
289,665 - Psest_0273 0.12 -0.2
289,665 - Psest_0273 0.12 -0.7
289,665 - Psest_0273 0.12 +0.5
289,682 + Psest_0273 0.13 -0.9
289,683 - Psest_0273 0.13 -1.9
289,700 + Psest_0273 0.15 -1.3
289,701 - Psest_0273 0.15 +0.9
289,761 - Psest_0273 0.19 +0.6
289,811 + Psest_0273 0.22 +0.8
289,812 - Psest_0273 0.22 +0.5
289,841 + Psest_0273 0.24 -0.7
289,841 + Psest_0273 0.24 -1.3
289,856 + Psest_0273 0.25 -1.0
289,856 + Psest_0273 0.25 -0.0
289,856 + Psest_0273 0.25 -1.9
290,290 + Psest_0273 0.56 -0.6
290,342 - Psest_0273 0.60 +0.1
290,342 - Psest_0273 0.60 -0.7

Or see this region's nucleotide sequence