Experiment: Ionizing radiation, 0 Gy
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1663 and Psest_1664 are separated by 146 nucleotides Psest_1664 and Psest_1665 overlap by 4 nucleotides Psest_1665 and Psest_1666 are separated by 3 nucleotides Psest_1666 and Psest_1667 are separated by 32 nucleotides
Psest_1663: Psest_1663 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 1,772,154 to 1,773,548
_1663
Psest_1664: Psest_1664 - Glycerophosphoryl diester phosphodiesterase, at 1,773,695 to 1,774,417
_1664
Psest_1665: Psest_1665 - hypothetical protein, at 1,774,414 to 1,774,722
_1665
Psest_1666: Psest_1666 - PilZ domain., at 1,774,726 to 1,775,361
_1666
Psest_1667: Psest_1667 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 1,775,394 to 1,776,641
_1667
Position (kb)
1774
1775 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1773.462 kb on + strand at 1773.637 kb on + strand at 1773.637 kb on + strand at 1773.878 kb on + strand, within Psest_1664 at 1773.879 kb on - strand, within Psest_1664 at 1773.879 kb on - strand, within Psest_1664 at 1773.927 kb on + strand, within Psest_1664 at 1773.928 kb on - strand, within Psest_1664 at 1773.928 kb on - strand, within Psest_1664 at 1773.928 kb on - strand, within Psest_1664 at 1773.928 kb on - strand, within Psest_1664 at 1773.950 kb on + strand, within Psest_1664 at 1773.950 kb on + strand, within Psest_1664 at 1773.951 kb on - strand, within Psest_1664 at 1774.133 kb on + strand, within Psest_1664 at 1774.134 kb on - strand, within Psest_1664 at 1774.197 kb on + strand, within Psest_1664 at 1774.198 kb on - strand, within Psest_1664 at 1774.198 kb on - strand, within Psest_1664 at 1774.198 kb on - strand, within Psest_1664 at 1774.328 kb on + strand, within Psest_1664 at 1774.329 kb on - strand, within Psest_1664 at 1774.329 kb on - strand, within Psest_1664 at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.405 kb on - strand at 1774.405 kb on - strand at 1774.405 kb on - strand at 1774.405 kb on - strand at 1774.405 kb on - strand at 1774.423 kb on + strand at 1774.424 kb on - strand at 1774.449 kb on + strand, within Psest_1665 at 1774.449 kb on + strand, within Psest_1665 at 1774.449 kb on + strand, within Psest_1665 at 1774.450 kb on - strand, within Psest_1665 at 1774.450 kb on - strand, within Psest_1665 at 1774.496 kb on + strand, within Psest_1665 at 1774.496 kb on + strand, within Psest_1665 at 1774.496 kb on + strand, within Psest_1665 at 1774.702 kb on + strand at 1774.702 kb on + strand at 1774.703 kb on - strand at 1774.703 kb on - strand at 1774.785 kb on + strand at 1774.847 kb on + strand, within Psest_1666 at 1774.848 kb on - strand, within Psest_1666 at 1774.848 kb on - strand, within Psest_1666 at 1774.848 kb on - strand, within Psest_1666 at 1774.874 kb on + strand, within Psest_1666 at 1774.874 kb on + strand, within Psest_1666 at 1774.874 kb on + strand, within Psest_1666 at 1774.875 kb on - strand, within Psest_1666 at 1774.875 kb on - strand, within Psest_1666 at 1774.875 kb on - strand, within Psest_1666 at 1774.875 kb on - strand, within Psest_1666 at 1774.916 kb on - strand, within Psest_1666 at 1774.935 kb on + strand, within Psest_1666 at 1774.936 kb on - strand, within Psest_1666 at 1774.936 kb on - strand, within Psest_1666 at 1775.088 kb on - strand, within Psest_1666 at 1775.088 kb on - strand, within Psest_1666 at 1775.261 kb on + strand, within Psest_1666 at 1775.261 kb on + strand, within Psest_1666 at 1775.332 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 0 Gy remove 1,773,462 + +3.7 1,773,637 + -1.2 1,773,637 + -0.3 1,773,878 + Psest_1664 0.25 -0.1 1,773,879 - Psest_1664 0.25 +1.4 1,773,879 - Psest_1664 0.25 +0.8 1,773,927 + Psest_1664 0.32 +1.4 1,773,928 - Psest_1664 0.32 +2.7 1,773,928 - Psest_1664 0.32 +1.0 1,773,928 - Psest_1664 0.32 +1.3 1,773,928 - Psest_1664 0.32 +0.9 1,773,950 + Psest_1664 0.35 -0.4 1,773,950 + Psest_1664 0.35 +0.1 1,773,951 - Psest_1664 0.35 +0.6 1,774,133 + Psest_1664 0.61 -0.8 1,774,134 - Psest_1664 0.61 -2.2 1,774,197 + Psest_1664 0.69 -0.4 1,774,198 - Psest_1664 0.70 -0.9 1,774,198 - Psest_1664 0.70 +0.3 1,774,198 - Psest_1664 0.70 -0.1 1,774,328 + Psest_1664 0.88 -0.2 1,774,329 - Psest_1664 0.88 -1.3 1,774,329 - Psest_1664 0.88 -0.6 1,774,404 + +0.6 1,774,404 + -2.4 1,774,404 + +1.1 1,774,404 + -1.1 1,774,404 + +1.4 1,774,404 + -1.0 1,774,404 + +0.4 1,774,404 + +0.4 1,774,405 - -0.4 1,774,405 - +0.4 1,774,405 - -1.2 1,774,405 - -0.1 1,774,405 - +0.4 1,774,423 + -0.4 1,774,424 - +0.3 1,774,449 + Psest_1665 0.11 -1.0 1,774,449 + Psest_1665 0.11 -0.8 1,774,449 + Psest_1665 0.11 +0.6 1,774,450 - Psest_1665 0.12 -1.2 1,774,450 - Psest_1665 0.12 -0.9 1,774,496 + Psest_1665 0.27 +1.4 1,774,496 + Psest_1665 0.27 -0.7 1,774,496 + Psest_1665 0.27 -1.1 1,774,702 + -0.1 1,774,702 + -0.2 1,774,703 - +0.4 1,774,703 - -0.4 1,774,785 + +0.9 1,774,847 + Psest_1666 0.19 +0.3 1,774,848 - Psest_1666 0.19 +1.2 1,774,848 - Psest_1666 0.19 -1.2 1,774,848 - Psest_1666 0.19 +0.3 1,774,874 + Psest_1666 0.23 +1.3 1,774,874 + Psest_1666 0.23 +0.3 1,774,874 + Psest_1666 0.23 +0.1 1,774,875 - Psest_1666 0.23 +1.0 1,774,875 - Psest_1666 0.23 -0.4 1,774,875 - Psest_1666 0.23 -2.2 1,774,875 - Psest_1666 0.23 -0.8 1,774,916 - Psest_1666 0.30 -0.7 1,774,935 + Psest_1666 0.33 +0.0 1,774,936 - Psest_1666 0.33 +0.7 1,774,936 - Psest_1666 0.33 +1.5 1,775,088 - Psest_1666 0.57 +0.9 1,775,088 - Psest_1666 0.57 +0.3 1,775,261 + Psest_1666 0.84 -0.9 1,775,261 + Psest_1666 0.84 -1.7 1,775,332 + +0.2
Or see this region's nucleotide sequence