Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02179 and SMc02178 are separated by 111 nucleotides SMc02178 and SMc02177 are separated by 198 nucleotides SMc02177 and SMc02176 are separated by 227 nucleotides
SMc02179: SMc02179 - hypothetical protein, at 516,081 to 516,887
SMc02179
SMc02178: SMc02178 - hypothetical protein, at 516,999 to 517,460
SMc02178
SMc02177: SMc02177 - hypothetical protein, at 517,659 to 518,273
SMc02177
SMc02176: SMc02176 - adenylate cyclase transmembrane protein, at 518,501 to 520,372
SMc02176
Position (kb) 517
518
519 Strain fitness (log2 ratio) -2
-1
0
1
2 at 516.783 kb on + strand, within SMc02179 at 516.784 kb on - strand, within SMc02179 at 516.784 kb on - strand, within SMc02179 at 516.784 kb on - strand, within SMc02179 at 517.099 kb on + strand, within SMc02178 at 517.099 kb on + strand, within SMc02178 at 517.100 kb on - strand, within SMc02178 at 517.229 kb on + strand, within SMc02178 at 517.230 kb on - strand, within SMc02178 at 517.432 kb on + strand at 517.432 kb on + strand at 517.432 kb on + strand at 517.433 kb on - strand at 517.433 kb on - strand at 517.599 kb on + strand at 517.848 kb on + strand, within SMc02177 at 517.848 kb on + strand, within SMc02177 at 517.848 kb on + strand, within SMc02177 at 517.849 kb on - strand, within SMc02177 at 517.941 kb on + strand, within SMc02177 at 517.942 kb on - strand, within SMc02177 at 518.150 kb on + strand, within SMc02177 at 518.184 kb on - strand, within SMc02177 at 518.184 kb on - strand, within SMc02177 at 518.281 kb on - strand at 518.281 kb on - strand at 518.712 kb on + strand, within SMc02176 at 518.712 kb on + strand, within SMc02176 at 518.713 kb on - strand, within SMc02176 at 518.747 kb on + strand, within SMc02176 at 518.870 kb on + strand, within SMc02176 at 518.871 kb on - strand, within SMc02176 at 518.871 kb on - strand, within SMc02176 at 518.871 kb on - strand, within SMc02176 at 518.982 kb on + strand, within SMc02176 at 518.982 kb on + strand, within SMc02176 at 518.983 kb on - strand, within SMc02176 at 518.983 kb on - strand, within SMc02176 at 519.113 kb on + strand, within SMc02176 at 519.113 kb on + strand, within SMc02176 at 519.114 kb on - strand, within SMc02176 at 519.114 kb on - strand, within SMc02176 at 519.114 kb on - strand, within SMc02176 at 519.114 kb on - strand, within SMc02176 at 519.117 kb on + strand, within SMc02176 at 519.144 kb on + strand, within SMc02176
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 516,783 + SMc02179 0.87 -1.1 516,784 - SMc02179 0.87 +0.5 516,784 - SMc02179 0.87 -0.2 516,784 - SMc02179 0.87 +0.3 517,099 + SMc02178 0.22 +0.4 517,099 + SMc02178 0.22 +0.7 517,100 - SMc02178 0.22 +1.7 517,229 + SMc02178 0.50 -0.1 517,230 - SMc02178 0.50 -0.3 517,432 + -0.4 517,432 + +0.0 517,432 + -2.0 517,433 - -0.4 517,433 - -0.8 517,599 + -0.0 517,848 + SMc02177 0.31 +1.7 517,848 + SMc02177 0.31 +0.4 517,848 + SMc02177 0.31 -0.1 517,849 - SMc02177 0.31 +0.3 517,941 + SMc02177 0.46 +0.2 517,942 - SMc02177 0.46 -0.6 518,150 + SMc02177 0.80 +0.4 518,184 - SMc02177 0.85 -0.3 518,184 - SMc02177 0.85 -0.9 518,281 - -0.4 518,281 - +0.6 518,712 + SMc02176 0.11 +0.0 518,712 + SMc02176 0.11 +0.1 518,713 - SMc02176 0.11 +0.7 518,747 + SMc02176 0.13 +0.3 518,870 + SMc02176 0.20 +0.2 518,871 - SMc02176 0.20 +1.3 518,871 - SMc02176 0.20 +0.3 518,871 - SMc02176 0.20 +0.4 518,982 + SMc02176 0.26 -0.3 518,982 + SMc02176 0.26 -0.2 518,983 - SMc02176 0.26 +0.1 518,983 - SMc02176 0.26 -0.2 519,113 + SMc02176 0.33 -1.0 519,113 + SMc02176 0.33 -0.9 519,114 - SMc02176 0.33 +2.0 519,114 - SMc02176 0.33 -0.0 519,114 - SMc02176 0.33 -0.1 519,114 - SMc02176 0.33 +0.7 519,117 + SMc02176 0.33 -0.1 519,144 + SMc02176 0.34 -0.2
Or see this region's nucleotide sequence