Strain Fitness in Sinorhizobium meliloti 1021 around SMa0217

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0214 and SMa0216 are separated by 31 nucleotidesSMa0216 and SMa0217 overlap by 4 nucleotidesSMa0217 and SMa0218 are separated by 9 nucleotides SMa0214: SMa0214 - 5-keto-4-deoxyuronate isomerase, at 116,673 to 117,515 SMa0214 SMa0216: SMa0216 - ABC transporter ATP-binding protein, at 117,547 to 118,287 SMa0216 SMa0217: SMa0217 - ABC transporter permease, at 118,284 to 119,363 SMa0217 SMa0218: SMa0218 - ABC transporter substrate-binding protein, at 119,373 to 120,323 SMa0218 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1at 117.387 kb on - strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.389 kb on - strand, within SMa0214at 117.389 kb on - strand, within SMa0214at 117.389 kb on - strand, within SMa0214at 117.389 kb on - strand, within SMa0214at 117.486 kb on + strandat 117.487 kb on - strandat 117.487 kb on - strandat 117.509 kb on + strandat 117.509 kb on + strandat 117.510 kb on - strandat 117.510 kb on - strandat 117.589 kb on - strandat 117.657 kb on - strand, within SMa0216at 117.748 kb on + strand, within SMa0216at 117.748 kb on + strand, within SMa0216at 117.801 kb on - strand, within SMa0216at 117.939 kb on + strand, within SMa0216at 117.982 kb on - strand, within SMa0216at 118.017 kb on + strand, within SMa0216at 118.018 kb on - strand, within SMa0216at 118.025 kb on + strand, within SMa0216at 118.025 kb on + strand, within SMa0216at 118.025 kb on + strand, within SMa0216at 118.026 kb on - strand, within SMa0216at 118.100 kb on + strand, within SMa0216at 118.254 kb on + strandat 118.255 kb on - strandat 118.309 kb on - strandat 118.619 kb on + strand, within SMa0217at 118.825 kb on + strand, within SMa0217at 118.825 kb on + strand, within SMa0217at 118.826 kb on - strand, within SMa0217at 118.904 kb on + strand, within SMa0217at 118.905 kb on - strand, within SMa0217at 118.905 kb on - strand, within SMa0217at 119.017 kb on + strand, within SMa0217at 119.017 kb on + strand, within SMa0217at 119.017 kb on + strand, within SMa0217at 119.017 kb on + strand, within SMa0217at 119.381 kb on - strandat 119.470 kb on + strand, within SMa0218at 119.471 kb on - strand, within SMa0218at 119.502 kb on + strand, within SMa0218at 119.519 kb on - strand, within SMa0218at 119.542 kb on + strand, within SMa0218at 119.542 kb on + strand, within SMa0218at 119.542 kb on + strand, within SMa0218at 119.543 kb on - strand, within SMa0218at 119.568 kb on + strand, within SMa0218at 119.611 kb on - strand, within SMa0218at 119.903 kb on - strand, within SMa0218at 119.932 kb on + strand, within SMa0218at 119.932 kb on + strand, within SMa0218at 119.933 kb on - strand, within SMa0218at 119.933 kb on - strand, within SMa0218at 119.933 kb on - strand, within SMa0218at 120.131 kb on - strand, within SMa0218at 120.220 kb on + strand, within SMa0218at 120.221 kb on - strand, within SMa0218at 120.328 kb on + strandat 120.328 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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117,387 - SMa0214 0.85 +0.1
117,388 + SMa0214 0.85 +0.1
117,388 + SMa0214 0.85 +0.9
117,388 + SMa0214 0.85 +0.4
117,388 + SMa0214 0.85 +0.0
117,388 + SMa0214 0.85 -0.3
117,388 + SMa0214 0.85 +0.6
117,388 + SMa0214 0.85 +0.7
117,389 - SMa0214 0.85 -0.6
117,389 - SMa0214 0.85 +0.1
117,389 - SMa0214 0.85 +1.5
117,389 - SMa0214 0.85 +0.4
117,486 + -0.4
117,487 - +0.2
117,487 - +1.1
117,509 + -0.3
117,509 + +0.1
117,510 - +0.2
117,510 - -1.3
117,589 - +0.3
117,657 - SMa0216 0.15 -0.2
117,748 + SMa0216 0.27 +0.0
117,748 + SMa0216 0.27 -0.2
117,801 - SMa0216 0.34 +0.3
117,939 + SMa0216 0.53 -2.6
117,982 - SMa0216 0.59 +1.7
118,017 + SMa0216 0.63 -0.8
118,018 - SMa0216 0.64 +0.2
118,025 + SMa0216 0.65 -0.3
118,025 + SMa0216 0.65 +0.1
118,025 + SMa0216 0.65 -0.0
118,026 - SMa0216 0.65 -0.7
118,100 + SMa0216 0.75 -0.7
118,254 + -0.7
118,255 - +0.1
118,309 - -0.7
118,619 + SMa0217 0.31 -1.1
118,825 + SMa0217 0.50 -0.3
118,825 + SMa0217 0.50 +0.2
118,826 - SMa0217 0.50 -0.0
118,904 + SMa0217 0.57 -0.6
118,905 - SMa0217 0.57 -0.5
118,905 - SMa0217 0.57 -0.2
119,017 + SMa0217 0.68 -0.6
119,017 + SMa0217 0.68 -0.3
119,017 + SMa0217 0.68 -0.7
119,017 + SMa0217 0.68 +0.1
119,381 - +0.3
119,470 + SMa0218 0.10 +0.0
119,471 - SMa0218 0.10 +0.1
119,502 + SMa0218 0.14 +0.1
119,519 - SMa0218 0.15 +0.5
119,542 + SMa0218 0.18 +0.1
119,542 + SMa0218 0.18 +0.4
119,542 + SMa0218 0.18 -0.1
119,543 - SMa0218 0.18 +0.1
119,568 + SMa0218 0.21 +0.0
119,611 - SMa0218 0.25 +0.4
119,903 - SMa0218 0.56 +0.3
119,932 + SMa0218 0.59 +0.1
119,932 + SMa0218 0.59 -0.5
119,933 - SMa0218 0.59 -0.3
119,933 - SMa0218 0.59 +0.5
119,933 - SMa0218 0.59 -0.3
120,131 - SMa0218 0.80 -0.9
120,220 + SMa0218 0.89 -0.6
120,221 - SMa0218 0.89 +0.4
120,328 + -1.0
120,328 + -0.0

Or see this region's nucleotide sequence