Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21064

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21063 and SM_b21064 overlap by 4 nucleotidesSM_b21064 and SM_b21065 are separated by 15 nucleotidesSM_b21065 and SM_b21066 overlap by 4 nucleotides SM_b21063: SM_b21063 - nucleotide-binding protein, at 697,071 to 698,642 _b21063 SM_b21064: SM_b21064 - hypothetical protein, at 698,639 to 699,172 _b21064 SM_b21065: SM_b21065 - hypothetical protein, at 699,188 to 700,165 _b21065 SM_b21066: SM_b21066 - glycosyltransferase, at 700,162 to 701,115 _b21066 Position (kb) 698 699 700Strain fitness (log2 ratio) -2 -1 0 1at 697.719 kb on + strand, within SM_b21063at 697.720 kb on - strand, within SM_b21063at 697.722 kb on + strand, within SM_b21063at 697.722 kb on + strand, within SM_b21063at 697.755 kb on + strand, within SM_b21063at 697.755 kb on + strand, within SM_b21063at 697.756 kb on - strand, within SM_b21063at 697.758 kb on + strand, within SM_b21063at 697.851 kb on + strand, within SM_b21063at 697.873 kb on + strand, within SM_b21063at 697.918 kb on + strand, within SM_b21063at 697.918 kb on + strand, within SM_b21063at 697.919 kb on - strand, within SM_b21063at 697.919 kb on - strand, within SM_b21063at 698.156 kb on + strand, within SM_b21063at 698.157 kb on - strand, within SM_b21063at 698.340 kb on + strand, within SM_b21063at 698.358 kb on + strand, within SM_b21063at 698.359 kb on - strand, within SM_b21063at 698.359 kb on - strand, within SM_b21063at 698.411 kb on + strand, within SM_b21063at 698.412 kb on - strand, within SM_b21063at 698.412 kb on - strandat 698.425 kb on + strand, within SM_b21063at 698.425 kb on + strand, within SM_b21063at 698.714 kb on + strand, within SM_b21064at 698.761 kb on + strand, within SM_b21064at 698.761 kb on + strand, within SM_b21064at 698.765 kb on - strand, within SM_b21064at 698.817 kb on + strand, within SM_b21064at 698.840 kb on + strand, within SM_b21064at 698.840 kb on + strand, within SM_b21064at 698.841 kb on - strand, within SM_b21064at 698.858 kb on + strand, within SM_b21064at 698.874 kb on - strand, within SM_b21064at 698.874 kb on - strand, within SM_b21064at 699.280 kb on + strandat 699.281 kb on - strandat 699.306 kb on + strand, within SM_b21065at 699.307 kb on - strand, within SM_b21065at 699.307 kb on - strand, within SM_b21065at 699.307 kb on - strand, within SM_b21065at 699.351 kb on - strand, within SM_b21065at 699.372 kb on + strand, within SM_b21065at 699.373 kb on - strand, within SM_b21065at 699.415 kb on - strand, within SM_b21065at 699.586 kb on + strand, within SM_b21065at 699.636 kb on - strand, within SM_b21065at 699.636 kb on - strand, within SM_b21065at 699.657 kb on + strand, within SM_b21065at 699.671 kb on + strand, within SM_b21065at 699.856 kb on + strand, within SM_b21065at 699.867 kb on + strand, within SM_b21065at 699.939 kb on - strand, within SM_b21065at 699.939 kb on - strand, within SM_b21065at 699.973 kb on + strand, within SM_b21065at 699.973 kb on + strand, within SM_b21065at 699.973 kb on + strand, within SM_b21065at 699.973 kb on + strand, within SM_b21065at 699.973 kb on + strand, within SM_b21065at 699.974 kb on - strand, within SM_b21065at 699.974 kb on - strand, within SM_b21065at 700.165 kb on + strandat 700.166 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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697,719 + SM_b21063 0.41 -0.1
697,720 - SM_b21063 0.41 +0.2
697,722 + SM_b21063 0.41 +0.2
697,722 + SM_b21063 0.41 +0.0
697,755 + SM_b21063 0.44 -0.7
697,755 + SM_b21063 0.44 +0.1
697,756 - SM_b21063 0.44 -0.9
697,758 + SM_b21063 0.44 +0.5
697,851 + SM_b21063 0.50 -0.9
697,873 + SM_b21063 0.51 -0.3
697,918 + SM_b21063 0.54 -0.1
697,918 + SM_b21063 0.54 +1.0
697,919 - SM_b21063 0.54 -0.1
697,919 - SM_b21063 0.54 +0.1
698,156 + SM_b21063 0.69 -0.2
698,157 - SM_b21063 0.69 -0.7
698,340 + SM_b21063 0.81 -1.3
698,358 + SM_b21063 0.82 +0.3
698,359 - SM_b21063 0.82 +0.7
698,359 - SM_b21063 0.82 -0.1
698,411 + SM_b21063 0.85 -0.3
698,412 - SM_b21063 0.85 -0.3
698,412 - -0.1
698,425 + SM_b21063 0.86 -0.4
698,425 + SM_b21063 0.86 -1.3
698,714 + SM_b21064 0.14 +0.1
698,761 + SM_b21064 0.23 -0.0
698,761 + SM_b21064 0.23 +0.2
698,765 - SM_b21064 0.24 +0.1
698,817 + SM_b21064 0.33 +0.1
698,840 + SM_b21064 0.38 +0.9
698,840 + SM_b21064 0.38 -1.0
698,841 - SM_b21064 0.38 +0.8
698,858 + SM_b21064 0.41 -0.7
698,874 - SM_b21064 0.44 +1.7
698,874 - SM_b21064 0.44 +0.2
699,280 + -0.8
699,281 - -1.9
699,306 + SM_b21065 0.12 +0.4
699,307 - SM_b21065 0.12 -0.5
699,307 - SM_b21065 0.12 -0.2
699,307 - SM_b21065 0.12 -0.4
699,351 - SM_b21065 0.17 -0.7
699,372 + SM_b21065 0.19 -2.1
699,373 - SM_b21065 0.19 -0.4
699,415 - SM_b21065 0.23 +0.3
699,586 + SM_b21065 0.41 -0.2
699,636 - SM_b21065 0.46 -0.5
699,636 - SM_b21065 0.46 -0.8
699,657 + SM_b21065 0.48 -0.1
699,671 + SM_b21065 0.49 +0.1
699,856 + SM_b21065 0.68 -1.0
699,867 + SM_b21065 0.69 +0.0
699,939 - SM_b21065 0.77 -0.3
699,939 - SM_b21065 0.77 +1.0
699,973 + SM_b21065 0.80 -0.1
699,973 + SM_b21065 0.80 +0.2
699,973 + SM_b21065 0.80 -0.2
699,973 + SM_b21065 0.80 -0.4
699,973 + SM_b21065 0.80 -1.0
699,974 - SM_b21065 0.80 -1.4
699,974 - SM_b21065 0.80 -1.0
700,165 + -0.1
700,166 - -0.9

Or see this region's nucleotide sequence