Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
SM_b20548: SM_b20548 - hypothetical protein, at 573,930 to 574,424
_b20548
Position (kb) 573
574
575 Strain fitness (log2 ratio) -1
0
1 at 573.044 kb on + strand at 573.182 kb on + strand at 573.183 kb on - strand at 573.211 kb on - strand at 573.260 kb on - strand at 573.345 kb on - strand at 573.397 kb on + strand at 573.398 kb on - strand at 573.398 kb on - strand at 573.398 kb on - strand at 573.398 kb on - strand at 573.401 kb on + strand at 573.402 kb on - strand at 573.402 kb on - strand at 573.640 kb on + strand at 573.660 kb on + strand at 573.720 kb on - strand at 573.752 kb on - strand at 573.857 kb on + strand at 573.858 kb on - strand at 574.031 kb on - strand, within SM_b20548 at 574.143 kb on + strand, within SM_b20548 at 574.144 kb on - strand, within SM_b20548 at 574.144 kb on - strand, within SM_b20548 at 574.144 kb on - strand, within SM_b20548 at 574.144 kb on - strand, within SM_b20548 at 574.187 kb on - strand, within SM_b20548 at 574.222 kb on + strand, within SM_b20548 at 574.351 kb on - strand, within SM_b20548 at 574.351 kb on - strand, within SM_b20548 at 574.352 kb on + strand, within SM_b20548 at 574.361 kb on + strand, within SM_b20548 at 574.457 kb on - strand at 574.653 kb on + strand at 574.654 kb on - strand at 574.800 kb on + strand at 574.801 kb on - strand at 574.801 kb on - strand at 574.844 kb on - strand at 574.890 kb on - strand at 574.959 kb on - strand at 574.968 kb on + strand at 574.968 kb on + strand at 574.968 kb on + strand at 574.969 kb on - strand at 575.146 kb on + strand at 575.147 kb on - strand at 575.189 kb on + strand at 575.279 kb on + strand at 575.280 kb on - strand at 575.289 kb on + strand at 575.289 kb on + strand at 575.289 kb on + strand at 575.290 kb on - strand at 575.290 kb on - strand at 575.365 kb on + strand at 575.365 kb on + strand at 575.366 kb on - strand at 575.366 kb on - strand at 575.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 573,044 + -0.6 573,182 + -0.1 573,183 - +0.6 573,211 - -0.8 573,260 - +1.2 573,345 - -0.6 573,397 + -0.5 573,398 - -0.6 573,398 - +0.7 573,398 - -0.0 573,398 - +0.0 573,401 + +0.1 573,402 - +0.6 573,402 - -0.3 573,640 + +0.2 573,660 + -0.2 573,720 - +0.6 573,752 - -0.8 573,857 + -0.2 573,858 - -0.0 574,031 - SM_b20548 0.20 +0.2 574,143 + SM_b20548 0.43 -1.3 574,144 - SM_b20548 0.43 +0.8 574,144 - SM_b20548 0.43 -0.1 574,144 - SM_b20548 0.43 -0.0 574,144 - SM_b20548 0.43 -1.1 574,187 - SM_b20548 0.52 -0.5 574,222 + SM_b20548 0.59 -1.1 574,351 - SM_b20548 0.85 -0.2 574,351 - SM_b20548 0.85 -0.4 574,352 + SM_b20548 0.85 +0.4 574,361 + SM_b20548 0.87 -0.5 574,457 - -0.1 574,653 + +0.5 574,654 - -0.7 574,800 + -0.1 574,801 - -0.2 574,801 - +0.3 574,844 - -0.4 574,890 - -0.5 574,959 - +0.2 574,968 + +0.5 574,968 + +0.2 574,968 + +0.1 574,969 - -0.6 575,146 + +0.1 575,147 - -0.5 575,189 + +0.8 575,279 + +0.4 575,280 - +0.3 575,289 + -0.1 575,289 + +0.2 575,289 + -0.4 575,290 - -0.2 575,290 - -0.4 575,365 + +0.4 575,365 + +1.3 575,366 - +0.4 575,366 - +0.5 575,366 - +1.5
Or see this region's nucleotide sequence