Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20281 and SM_b20282 are separated by 3 nucleotides SM_b20282 and SM_b20283 are separated by 10 nucleotides
SM_b20281: SM_b20281 - spermidine/putrescine ABC transporter ATP-binding protein, at 285,617 to 286,687
_b20281
SM_b20282: SM_b20282 - spermidine/putrescine ABC transporter permease, at 286,691 to 287,482
_b20282
SM_b20283: SM_b20283 - spermidine/putrescine ABC transporter permease, at 287,493 to 288,476
_b20283
Position (kb) 286
287
288 Strain fitness (log2 ratio) -2
-1
0
1
2 at 285.829 kb on - strand, within SM_b20281 at 285.829 kb on - strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.434 kb on + strand, within SM_b20281 at 286.435 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281 at 286.555 kb on + strand, within SM_b20281 at 286.883 kb on + strand, within SM_b20282 at 287.231 kb on + strand, within SM_b20282 at 287.278 kb on - strand, within SM_b20282 at 287.415 kb on + strand at 287.415 kb on + strand at 287.416 kb on - strand at 287.434 kb on - strand at 287.473 kb on - strand at 287.494 kb on + strand at 287.704 kb on + strand, within SM_b20283 at 287.704 kb on + strand, within SM_b20283 at 287.704 kb on + strand, within SM_b20283 at 287.705 kb on - strand, within SM_b20283 at 287.706 kb on + strand, within SM_b20283 at 287.706 kb on + strand, within SM_b20283 at 287.706 kb on + strand, within SM_b20283 at 287.706 kb on + strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.839 kb on + strand, within SM_b20283 at 287.840 kb on - strand, within SM_b20283 at 287.857 kb on + strand, within SM_b20283 at 287.857 kb on + strand, within SM_b20283 at 287.858 kb on - strand, within SM_b20283 at 287.858 kb on - strand, within SM_b20283 at 287.872 kb on + strand, within SM_b20283 at 287.872 kb on + strand, within SM_b20283 at 287.872 kb on + strand, within SM_b20283 at 287.873 kb on - strand, within SM_b20283 at 287.873 kb on - strand, within SM_b20283 at 287.931 kb on - strand, within SM_b20283 at 288.085 kb on + strand, within SM_b20283 at 288.085 kb on + strand, within SM_b20283 at 288.085 kb on + strand, within SM_b20283 at 288.085 kb on + strand, within SM_b20283 at 288.086 kb on - strand, within SM_b20283 at 288.086 kb on - strand, within SM_b20283 at 288.241 kb on + strand, within SM_b20283 at 288.380 kb on - strand at 288.418 kb on + strand at 288.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 285,829 - SM_b20281 0.20 -0.8 285,829 - SM_b20281 0.20 -1.1 286,020 + SM_b20281 0.38 +0.5 286,020 + SM_b20281 0.38 -0.2 286,020 + SM_b20281 0.38 -0.2 286,434 + SM_b20281 0.76 -0.1 286,435 - SM_b20281 0.76 -0.2 286,504 - SM_b20281 0.83 +0.1 286,504 - SM_b20281 0.83 -0.2 286,504 - SM_b20281 0.83 -1.2 286,555 + SM_b20281 0.88 -1.9 286,883 + SM_b20282 0.24 -1.4 287,231 + SM_b20282 0.68 -1.1 287,278 - SM_b20282 0.74 -0.2 287,415 + -0.8 287,415 + +0.0 287,416 - +0.6 287,434 - -1.0 287,473 - -0.7 287,494 + -0.8 287,704 + SM_b20283 0.21 +1.5 287,704 + SM_b20283 0.21 -0.6 287,704 + SM_b20283 0.21 -0.2 287,705 - SM_b20283 0.22 -1.5 287,706 + SM_b20283 0.22 -0.7 287,706 + SM_b20283 0.22 -0.4 287,706 + SM_b20283 0.22 +1.0 287,706 + SM_b20283 0.22 +0.3 287,707 - SM_b20283 0.22 -0.1 287,707 - SM_b20283 0.22 +1.8 287,707 - SM_b20283 0.22 -0.1 287,707 - SM_b20283 0.22 +0.1 287,707 - SM_b20283 0.22 -0.4 287,839 + SM_b20283 0.35 -0.5 287,840 - SM_b20283 0.35 +1.1 287,857 + SM_b20283 0.37 -0.6 287,857 + SM_b20283 0.37 +0.5 287,858 - SM_b20283 0.37 -1.3 287,858 - SM_b20283 0.37 -0.0 287,872 + SM_b20283 0.39 +1.9 287,872 + SM_b20283 0.39 -0.7 287,872 + SM_b20283 0.39 +0.1 287,873 - SM_b20283 0.39 -0.3 287,873 - SM_b20283 0.39 -0.4 287,931 - SM_b20283 0.45 -0.6 288,085 + SM_b20283 0.60 +0.2 288,085 + SM_b20283 0.60 +1.5 288,085 + SM_b20283 0.60 +0.2 288,085 + SM_b20283 0.60 +0.2 288,086 - SM_b20283 0.60 +1.2 288,086 - SM_b20283 0.60 -1.0 288,241 + SM_b20283 0.76 -0.3 288,380 - +0.8 288,418 + -0.2 288,467 + +0.9
Or see this region's nucleotide sequence