Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02903 and SMc02904 are separated by 2 nucleotides SMc02904 and SMc02905 overlap by 20 nucleotides SMc02905 and SMc02906 are separated by 108 nucleotides SMc02906 and SMc02907 are separated by 75 nucleotides
SMc02903: SMc02903 - hypothetical protein, at 258,435 to 259,415
SMc02903
SMc02904: SMc02904 - hypothetical protein, at 259,418 to 260,143
SMc02904
SMc02905: SMc02905 - DNA polymerase III subunits gamma and tau, at 260,124 to 262,004
SMc02905
SMc02906: SMc02906 - hypothetical protein, at 262,113 to 262,436
SMc02906
SMc02907: SMc02907 - amino acid efflux transmembrane protein, at 262,512 to 263,123
SMc02907
Position (kb) 260
261
262
263 Strain fitness (log2 ratio) -2
-1
0
1 at 259.453 kb on + strand at 259.453 kb on + strand at 259.453 kb on + strand at 259.453 kb on + strand at 259.454 kb on - strand at 259.454 kb on - strand at 259.454 kb on - strand at 259.688 kb on + strand, within SMc02904 at 259.688 kb on + strand, within SMc02904 at 259.689 kb on - strand, within SMc02904 at 259.866 kb on + strand, within SMc02904 at 262.014 kb on - strand at 262.053 kb on + strand at 262.078 kb on + strand at 262.338 kb on - strand, within SMc02906 at 262.477 kb on + strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.667 kb on - strand, within SMc02907 at 262.755 kb on + strand, within SMc02907 at 262.756 kb on - strand, within SMc02907 at 262.865 kb on + strand, within SMc02907 at 262.896 kb on + strand, within SMc02907 at 262.896 kb on + strand, within SMc02907 at 262.896 kb on + strand, within SMc02907 at 262.897 kb on - strand, within SMc02907
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 259,453 + -0.8 259,453 + -0.3 259,453 + -0.4 259,453 + +1.1 259,454 - +0.3 259,454 - -0.9 259,454 - -0.0 259,688 + SMc02904 0.37 -1.0 259,688 + SMc02904 0.37 -1.1 259,689 - SMc02904 0.37 -0.8 259,866 + SMc02904 0.62 +0.4 262,014 - -0.6 262,053 + -1.1 262,078 + +0.3 262,338 - SMc02906 0.69 -2.5 262,477 + +0.8 262,478 - -0.1 262,478 - +0.3 262,478 - +0.4 262,667 - SMc02907 0.25 -0.0 262,755 + SMc02907 0.40 -1.1 262,756 - SMc02907 0.40 -1.5 262,865 + SMc02907 0.58 +0.0 262,896 + SMc02907 0.63 +0.2 262,896 + SMc02907 0.63 +0.2 262,896 + SMc02907 0.63 -0.5 262,897 - SMc02907 0.63 -0.8
Or see this region's nucleotide sequence