Strain Fitness in Sinorhizobium meliloti 1021 around SMc02385

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02384 and SMc02385 are separated by 95 nucleotidesSMc02385 and SMc02386 are separated by 28 nucleotides SMc02384: SMc02384 - glycosyltransferase transmembrane protein, at 1,138,707 to 1,139,726 SMc02384 SMc02385: SMc02385 - hypothetical protein, at 1,139,822 to 1,140,778 SMc02385 SMc02386: SMc02386 - AMP nucleosidase, at 1,140,807 to 1,142,309 SMc02386 Position (kb) 1139 1140 1141Strain fitness (log2 ratio) -1 0 1at 1138.912 kb on + strand, within SMc02384at 1138.913 kb on - strand, within SMc02384at 1138.988 kb on - strand, within SMc02384at 1139.046 kb on - strand, within SMc02384at 1139.051 kb on - strand, within SMc02384at 1139.065 kb on + strandat 1139.065 kb on + strand, within SMc02384at 1139.216 kb on - strand, within SMc02384at 1139.216 kb on - strand, within SMc02384at 1139.346 kb on + strand, within SMc02384at 1139.662 kb on - strandat 1139.765 kb on - strandat 1139.765 kb on - strandat 1139.765 kb on - strandat 1139.768 kb on + strandat 1139.776 kb on + strandat 1139.776 kb on + strandat 1139.777 kb on - strandat 1139.778 kb on + strandat 1139.778 kb on + strandat 1139.778 kb on + strandat 1139.779 kb on - strandat 1139.827 kb on + strandat 1139.827 kb on + strandat 1140.044 kb on + strand, within SMc02385at 1140.617 kb on + strand, within SMc02385at 1140.808 kb on + strandat 1140.826 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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1,138,912 + SMc02384 0.20 +0.4
1,138,913 - SMc02384 0.20 +0.3
1,138,988 - SMc02384 0.28 +0.1
1,139,046 - SMc02384 0.33 +0.1
1,139,051 - SMc02384 0.34 -0.0
1,139,065 + +1.6
1,139,065 + SMc02384 0.35 +0.5
1,139,216 - SMc02384 0.50 +0.1
1,139,216 - SMc02384 0.50 +0.4
1,139,346 + SMc02384 0.63 +0.3
1,139,662 - +1.2
1,139,765 - -0.7
1,139,765 - -0.7
1,139,765 - -0.6
1,139,768 + +0.3
1,139,776 + +0.0
1,139,776 + +0.7
1,139,777 - -1.3
1,139,778 + +0.7
1,139,778 + +0.0
1,139,778 + +1.1
1,139,779 - -1.0
1,139,827 + -0.1
1,139,827 + -0.3
1,140,044 + SMc02385 0.23 -1.1
1,140,617 + SMc02385 0.83 -1.1
1,140,808 + -1.2
1,140,826 + +0.1

Or see this region's nucleotide sequence