Strain Fitness in Sinorhizobium meliloti 1021 around SMc01104

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01105 and SMc01104 are separated by 94 nucleotidesSMc01104 and SMc01103 are separated by 354 nucleotides SMc01105: SMc01105 - uridine nucleosidase (EC 3.2.2.3) (from data), at 449,429 to 450,373 SMc01105 SMc01104: SMc01104 - chemoreceptor methyl-accepting chemotaxis transmembrane protein, at 450,468 to 452,834 SMc01104 SMc01103: SMc01103 - Ribokinase (EC 2.7.1.15) (from data), at 453,189 to 454,088 SMc01103 Position (kb) 450 451 452 453Strain fitness (log2 ratio) -2 -1 0 1at 449.920 kb on - strand, within SMc01105at 449.945 kb on + strand, within SMc01105at 449.946 kb on - strand, within SMc01105at 449.946 kb on - strand, within SMc01105at 449.946 kb on - strand, within SMc01105at 449.946 kb on - strand, within SMc01105at 450.136 kb on - strand, within SMc01105at 450.179 kb on + strand, within SMc01105at 450.179 kb on + strand, within SMc01105at 450.180 kb on - strand, within SMc01105at 450.180 kb on - strand, within SMc01105at 450.181 kb on + strand, within SMc01105at 450.182 kb on - strand, within SMc01105at 450.182 kb on - strand, within SMc01105at 450.257 kb on - strand, within SMc01105at 450.257 kb on - strand, within SMc01105at 450.547 kb on + strandat 450.950 kb on + strand, within SMc01104at 450.950 kb on + strand, within SMc01104at 450.951 kb on - strand, within SMc01104at 450.951 kb on - strand, within SMc01104at 450.951 kb on - strand, within SMc01104at 450.951 kb on - strand, within SMc01104at 451.158 kb on - strand, within SMc01104at 451.471 kb on + strand, within SMc01104at 451.749 kb on - strand, within SMc01104at 451.750 kb on + strand, within SMc01104at 451.750 kb on + strand, within SMc01104at 451.750 kb on + strand, within SMc01104at 451.750 kb on + strand, within SMc01104at 451.750 kb on + strand, within SMc01104at 451.750 kb on + strand, within SMc01104at 451.751 kb on - strand, within SMc01104at 451.829 kb on - strand, within SMc01104at 451.880 kb on + strand, within SMc01104at 451.880 kb on + strand, within SMc01104at 451.881 kb on - strand, within SMc01104at 451.881 kb on - strand, within SMc01104at 451.881 kb on - strand, within SMc01104at 451.881 kb on - strand, within SMc01104at 451.882 kb on + strand, within SMc01104at 451.882 kb on + strand, within SMc01104at 451.882 kb on + strand, within SMc01104at 451.882 kb on + strand, within SMc01104at 451.882 kb on + strand, within SMc01104at 451.882 kb on + strand, within SMc01104at 451.883 kb on - strand, within SMc01104at 451.883 kb on - strand, within SMc01104at 451.883 kb on - strand, within SMc01104at 451.883 kb on - strand, within SMc01104at 451.883 kb on - strand, within SMc01104at 451.975 kb on + strand, within SMc01104at 451.975 kb on + strand, within SMc01104at 451.976 kb on - strand, within SMc01104at 451.976 kb on - strand, within SMc01104at 452.109 kb on - strand, within SMc01104at 452.109 kb on - strand, within SMc01104at 452.147 kb on - strand, within SMc01104at 452.147 kb on - strand, within SMc01104at 452.210 kb on + strand, within SMc01104at 452.211 kb on - strand, within SMc01104at 452.258 kb on - strand, within SMc01104at 452.305 kb on + strand, within SMc01104at 452.306 kb on - strand, within SMc01104at 452.350 kb on + strand, within SMc01104at 452.393 kb on + strand, within SMc01104at 452.394 kb on - strand, within SMc01104at 452.419 kb on + strand, within SMc01104at 452.485 kb on + strand, within SMc01104at 452.746 kb on + strandat 452.746 kb on + strandat 452.746 kb on + strandat 452.746 kb on + strandat 452.866 kb on - strandat 452.866 kb on - strandat 452.866 kb on - strandat 452.886 kb on + strandat 452.983 kb on + strandat 452.983 kb on + strandat 452.984 kb on - strandat 453.073 kb on + strandat 453.074 kb on - strandat 453.074 kb on - strandat 453.088 kb on + strandat 453.122 kb on + strandat 453.191 kb on - strandat 453.328 kb on + strand, within SMc01103at 453.341 kb on + strand, within SMc01103at 453.341 kb on + strand, within SMc01103at 453.341 kb on + strand, within SMc01103at 453.342 kb on - strand, within SMc01103at 453.360 kb on - strand, within SMc01103at 453.441 kb on + strand, within SMc01103

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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449,920 - SMc01105 0.52 +0.2
449,945 + SMc01105 0.55 -0.6
449,946 - SMc01105 0.55 +0.0
449,946 - SMc01105 0.55 -1.1
449,946 - SMc01105 0.55 +1.0
449,946 - SMc01105 0.55 -0.3
450,136 - SMc01105 0.75 +0.3
450,179 + SMc01105 0.79 +0.2
450,179 + SMc01105 0.79 +0.0
450,180 - SMc01105 0.79 -0.2
450,180 - SMc01105 0.79 +0.0
450,181 + SMc01105 0.80 -0.3
450,182 - SMc01105 0.80 +0.7
450,182 - SMc01105 0.80 +0.7
450,257 - SMc01105 0.88 -0.3
450,257 - SMc01105 0.88 -0.2
450,547 + -0.7
450,950 + SMc01104 0.20 +0.8
450,950 + SMc01104 0.20 -2.4
450,951 - SMc01104 0.20 -0.1
450,951 - SMc01104 0.20 -0.3
450,951 - SMc01104 0.20 +0.8
450,951 - SMc01104 0.20 -0.3
451,158 - SMc01104 0.29 -0.1
451,471 + SMc01104 0.42 +0.9
451,749 - SMc01104 0.54 +0.5
451,750 + SMc01104 0.54 +0.2
451,750 + SMc01104 0.54 +0.6
451,750 + SMc01104 0.54 +0.3
451,750 + SMc01104 0.54 -1.1
451,750 + SMc01104 0.54 -0.2
451,750 + SMc01104 0.54 +0.3
451,751 - SMc01104 0.54 -0.3
451,829 - SMc01104 0.57 -0.4
451,880 + SMc01104 0.60 +1.5
451,880 + SMc01104 0.60 +0.3
451,881 - SMc01104 0.60 +0.4
451,881 - SMc01104 0.60 -0.1
451,881 - SMc01104 0.60 +0.4
451,881 - SMc01104 0.60 +0.2
451,882 + SMc01104 0.60 +1.4
451,882 + SMc01104 0.60 -0.4
451,882 + SMc01104 0.60 -0.2
451,882 + SMc01104 0.60 +0.5
451,882 + SMc01104 0.60 -0.2
451,882 + SMc01104 0.60 -0.1
451,883 - SMc01104 0.60 +0.2
451,883 - SMc01104 0.60 +0.6
451,883 - SMc01104 0.60 +0.1
451,883 - SMc01104 0.60 +0.2
451,883 - SMc01104 0.60 +0.2
451,975 + SMc01104 0.64 -0.8
451,975 + SMc01104 0.64 +1.5
451,976 - SMc01104 0.64 +1.4
451,976 - SMc01104 0.64 -1.3
452,109 - SMc01104 0.69 -1.0
452,109 - SMc01104 0.69 +0.0
452,147 - SMc01104 0.71 -0.4
452,147 - SMc01104 0.71 +0.3
452,210 + SMc01104 0.74 +0.1
452,211 - SMc01104 0.74 +0.6
452,258 - SMc01104 0.76 +0.1
452,305 + SMc01104 0.78 +0.6
452,306 - SMc01104 0.78 +0.3
452,350 + SMc01104 0.80 +0.9
452,393 + SMc01104 0.81 +1.0
452,394 - SMc01104 0.81 +0.8
452,419 + SMc01104 0.82 -0.2
452,485 + SMc01104 0.85 -1.5
452,746 + -0.1
452,746 + +0.1
452,746 + +1.6
452,746 + -0.8
452,866 - -0.4
452,866 - -1.1
452,866 - -0.0
452,886 + -0.2
452,983 + +1.4
452,983 + -0.8
452,984 - -1.2
453,073 + +1.0
453,074 - -0.2
453,074 - -0.2
453,088 + -1.2
453,122 + -0.2
453,191 - +0.2
453,328 + SMc01103 0.15 +0.3
453,341 + SMc01103 0.17 -0.2
453,341 + SMc01103 0.17 +0.8
453,341 + SMc01103 0.17 +0.2
453,342 - SMc01103 0.17 +0.9
453,360 - SMc01103 0.19 -0.5
453,441 + SMc01103 0.28 -0.3

Or see this region's nucleotide sequence