Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00930 and SMc00900 are separated by 228 nucleotides SMc00900 and SMc00899 overlap by 1 nucleotides SMc00899 and SMc00898 are separated by 138 nucleotides
SMc00930: SMc00930 - hypothetical protein, at 881,816 to 882,715
SMc00930
SMc00900: SMc00900 - hypothetical protein, at 882,944 to 883,330
SMc00900
SMc00899: SMc00899 - hypothetical protein, at 883,330 to 883,584
SMc00899
SMc00898: SMc00898 - glutathione-regulated potassium-efflux system transmembrane protein, at 883,723 to 885,555
SMc00898
Position (kb) 882
883
884 Strain fitness (log2 ratio) -1
0
1
2 at 882.102 kb on + strand, within SMc00930 at 882.169 kb on + strand, within SMc00930 at 882.169 kb on + strand, within SMc00930 at 882.170 kb on - strand, within SMc00930 at 882.171 kb on + strand, within SMc00930 at 882.171 kb on + strand, within SMc00930 at 882.171 kb on + strand, within SMc00930 at 882.172 kb on - strand, within SMc00930 at 882.261 kb on - strand, within SMc00930 at 882.302 kb on + strand, within SMc00930 at 882.303 kb on - strand, within SMc00930 at 882.389 kb on + strand, within SMc00930 at 882.389 kb on + strand at 882.389 kb on + strand, within SMc00930 at 882.390 kb on - strand, within SMc00930 at 882.390 kb on - strand, within SMc00930 at 882.392 kb on - strand, within SMc00930 at 882.431 kb on - strand, within SMc00930 at 882.711 kb on + strand at 882.712 kb on - strand at 882.712 kb on - strand at 882.713 kb on + strand at 882.713 kb on + strand at 882.713 kb on + strand at 882.713 kb on + strand at 882.713 kb on + strand at 882.713 kb on + strand at 882.713 kb on + strand at 882.713 kb on + strand at 882.714 kb on - strand at 882.714 kb on - strand at 882.714 kb on - strand at 882.714 kb on - strand at 882.714 kb on - strand at 882.714 kb on - strand at 882.827 kb on - strand at 882.827 kb on - strand at 882.871 kb on + strand at 882.872 kb on - strand at 882.872 kb on - strand at 882.946 kb on - strand at 883.024 kb on - strand, within SMc00900 at 883.024 kb on - strand, within SMc00900 at 883.106 kb on - strand, within SMc00900 at 883.106 kb on - strand, within SMc00900 at 883.331 kb on + strand at 883.331 kb on + strand at 883.331 kb on + strand at 883.614 kb on - strand at 883.656 kb on + strand at 883.657 kb on - strand at 884.051 kb on + strand, within SMc00898 at 884.052 kb on - strand, within SMc00898 at 884.052 kb on - strand, within SMc00898 at 884.208 kb on - strand, within SMc00898 at 884.208 kb on - strand, within SMc00898 at 884.270 kb on - strand, within SMc00898 at 884.270 kb on - strand, within SMc00898
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 882,102 + SMc00930 0.32 +0.1 882,169 + SMc00930 0.39 +0.8 882,169 + SMc00930 0.39 +0.2 882,170 - SMc00930 0.39 +0.1 882,171 + SMc00930 0.39 -0.1 882,171 + SMc00930 0.39 +1.2 882,171 + SMc00930 0.39 -0.4 882,172 - SMc00930 0.40 -0.5 882,261 - SMc00930 0.49 -0.0 882,302 + SMc00930 0.54 -0.4 882,303 - SMc00930 0.54 -1.2 882,389 + SMc00930 0.64 -0.3 882,389 + +2.3 882,389 + SMc00930 0.64 +0.2 882,390 - SMc00930 0.64 -0.1 882,390 - SMc00930 0.64 +0.7 882,392 - SMc00930 0.64 -0.5 882,431 - SMc00930 0.68 -0.7 882,711 + +0.5 882,712 - +0.2 882,712 - -0.1 882,713 + -0.9 882,713 + -0.0 882,713 + -0.2 882,713 + +0.2 882,713 + -0.0 882,713 + -0.0 882,713 + +0.5 882,713 + +0.3 882,714 - +0.5 882,714 - -0.1 882,714 - -0.6 882,714 - +0.6 882,714 - +0.7 882,714 - -0.1 882,827 - -0.8 882,827 - -1.3 882,871 + -1.5 882,872 - +0.1 882,872 - -0.2 882,946 - -0.3 883,024 - SMc00900 0.21 -0.5 883,024 - SMc00900 0.21 -0.9 883,106 - SMc00900 0.42 -0.4 883,106 - SMc00900 0.42 -0.3 883,331 + +0.4 883,331 + +0.2 883,331 + +0.2 883,614 - +0.3 883,656 + -0.4 883,657 - +0.2 884,051 + SMc00898 0.18 -0.8 884,052 - SMc00898 0.18 -0.3 884,052 - SMc00898 0.18 -0.2 884,208 - SMc00898 0.26 -0.1 884,208 - SMc00898 0.26 -0.1 884,270 - SMc00898 0.30 -0.3 884,270 - SMc00898 0.30 -0.1
Or see this region's nucleotide sequence