Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00803 and SMc00804 are separated by 118 nucleotides SMc00804 and SMc00805 are separated by 33 nucleotides SMc00805 and SMc00806 are separated by 273 nucleotides
SMc00803: SMc00803 - hypothetical protein, at 822,073 to 822,888
SMc00803
SMc00804: SMc00804 - hypothetical protein, at 823,007 to 824,230
SMc00804
SMc00805: SMc00805 - hypothetical protein, at 824,264 to 824,908
SMc00805
SMc00806: SMc00806 - hypothetical protein, at 825,182 to 825,550
SMc00806
Position (kb) 823
824
825 Strain fitness (log2 ratio) -2
-1
0
1
2 at 822.086 kb on + strand at 822.155 kb on + strand, within SMc00803 at 822.155 kb on + strand, within SMc00803 at 822.155 kb on + strand, within SMc00803 at 822.155 kb on + strand, within SMc00803 at 822.156 kb on - strand, within SMc00803 at 822.166 kb on + strand, within SMc00803 at 822.166 kb on + strand, within SMc00803 at 822.189 kb on - strand, within SMc00803 at 822.198 kb on - strand, within SMc00803 at 822.207 kb on - strand, within SMc00803 at 822.259 kb on - strand, within SMc00803 at 822.260 kb on + strand, within SMc00803 at 822.260 kb on + strand, within SMc00803 at 822.260 kb on + strand, within SMc00803 at 822.260 kb on + strand, within SMc00803 at 822.261 kb on - strand, within SMc00803 at 822.261 kb on - strand, within SMc00803 at 822.261 kb on - strand, within SMc00803 at 822.261 kb on - strand, within SMc00803 at 822.261 kb on - strand, within SMc00803 at 822.404 kb on + strand, within SMc00803 at 822.516 kb on + strand, within SMc00803 at 822.516 kb on + strand, within SMc00803 at 822.518 kb on + strand, within SMc00803 at 822.642 kb on + strand, within SMc00803 at 822.644 kb on + strand, within SMc00803 at 822.644 kb on + strand, within SMc00803 at 822.668 kb on + strand at 822.668 kb on + strand, within SMc00803 at 822.915 kb on + strand at 822.915 kb on + strand at 822.915 kb on + strand at 822.915 kb on + strand at 822.915 kb on + strand at 822.959 kb on + strand at 822.959 kb on + strand at 823.818 kb on + strand, within SMc00804 at 823.818 kb on + strand, within SMc00804 at 824.228 kb on + strand at 824.228 kb on + strand at 824.229 kb on - strand at 824.229 kb on - strand at 824.229 kb on - strand at 824.243 kb on + strand at 824.244 kb on - strand at 824.244 kb on - strand at 824.244 kb on - strand at 824.488 kb on + strand, within SMc00805 at 824.802 kb on + strand, within SMc00805 at 824.803 kb on - strand, within SMc00805 at 824.843 kb on + strand, within SMc00805 at 824.844 kb on - strand at 824.906 kb on + strand at 824.906 kb on + strand at 824.920 kb on + strand at 824.920 kb on + strand at 824.921 kb on - strand at 824.921 kb on - strand at 824.921 kb on - strand at 824.922 kb on + strand at 824.922 kb on + strand at 824.923 kb on - strand at 824.953 kb on - strand at 825.036 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.069 kb on - strand at 825.077 kb on + strand at 825.166 kb on - strand at 825.166 kb on - strand at 825.175 kb on - strand at 825.175 kb on - strand at 825.175 kb on - strand at 825.192 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 822,086 + +0.6 822,155 + SMc00803 0.10 +0.2 822,155 + SMc00803 0.10 -1.1 822,155 + SMc00803 0.10 -0.1 822,155 + SMc00803 0.10 -0.1 822,156 - SMc00803 0.10 +0.1 822,166 + SMc00803 0.11 +0.2 822,166 + SMc00803 0.11 -0.3 822,189 - SMc00803 0.14 -1.9 822,198 - SMc00803 0.15 +2.1 822,207 - SMc00803 0.16 -0.3 822,259 - SMc00803 0.23 +1.7 822,260 + SMc00803 0.23 +0.3 822,260 + SMc00803 0.23 +0.4 822,260 + SMc00803 0.23 -0.2 822,260 + SMc00803 0.23 +0.1 822,261 - SMc00803 0.23 -0.4 822,261 - SMc00803 0.23 -0.4 822,261 - SMc00803 0.23 -0.2 822,261 - SMc00803 0.23 +1.4 822,261 - SMc00803 0.23 -0.1 822,404 + SMc00803 0.41 -0.9 822,516 + SMc00803 0.54 -0.5 822,516 + SMc00803 0.54 -0.1 822,518 + SMc00803 0.55 +0.2 822,642 + SMc00803 0.70 +0.1 822,644 + SMc00803 0.70 -1.1 822,644 + SMc00803 0.70 +1.9 822,668 + -0.3 822,668 + SMc00803 0.73 +0.2 822,915 + +0.2 822,915 + +0.3 822,915 + +1.1 822,915 + +1.0 822,915 + -0.6 822,959 + +0.4 822,959 + -0.3 823,818 + SMc00804 0.66 -1.1 823,818 + SMc00804 0.66 +1.1 824,228 + -0.6 824,228 + -0.3 824,229 - +0.2 824,229 - -0.2 824,229 - +0.8 824,243 + -1.0 824,244 - +0.7 824,244 - +0.1 824,244 - +0.4 824,488 + SMc00805 0.35 +0.9 824,802 + SMc00805 0.83 +0.3 824,803 - SMc00805 0.84 -0.1 824,843 + SMc00805 0.90 +0.6 824,844 - +0.8 824,906 + +0.1 824,906 + +1.0 824,920 + -0.8 824,920 + -0.5 824,921 - +0.1 824,921 - -0.8 824,921 - +0.7 824,922 + -1.0 824,922 + +0.4 824,923 - +0.4 824,953 - +0.1 825,036 + +1.7 825,068 + -0.6 825,068 + -1.6 825,069 - -0.0 825,077 + +0.4 825,166 - +0.1 825,166 - +0.0 825,175 - -0.5 825,175 - +0.0 825,175 - -2.4 825,192 + -0.2
Or see this region's nucleotide sequence