Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00395 and SMc00396 overlap by 4 nucleotides SMc00396 and SMc00397 are separated by 151 nucleotides SMc00397 and SMc00460 overlap by 52 nucleotides
SMc00395: SMc00395 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 345,628 to 346,266
SMc00395
SMc00396: SMc00396 - hypothetical protein, at 346,263 to 346,715
SMc00396
SMc00397: SMc00397 - hypothetical protein, at 346,867 to 347,427
SMc00397
SMc00460: SMc00460 - hypothetical protein, at 347,376 to 348,509
SMc00460
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1 at 346.132 kb on + strand, within SMc00395 at 346.200 kb on - strand, within SMc00395 at 346.223 kb on + strand at 346.223 kb on + strand at 346.223 kb on + strand at 346.224 kb on - strand at 346.224 kb on - strand at 346.224 kb on - strand at 346.355 kb on - strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.508 kb on - strand, within SMc00396 at 346.798 kb on + strand at 346.799 kb on - strand at 346.799 kb on - strand at 346.864 kb on + strand at 346.864 kb on + strand at 346.865 kb on - strand at 346.865 kb on - strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.875 kb on + strand at 346.994 kb on - strand, within SMc00397 at 347.162 kb on - strand, within SMc00397 at 347.162 kb on - strand, within SMc00397 at 347.162 kb on - strand, within SMc00397 at 347.170 kb on + strand, within SMc00397 at 347.171 kb on - strand, within SMc00397 at 347.302 kb on + strand, within SMc00397 at 347.377 kb on + strand at 347.378 kb on - strand at 347.495 kb on - strand, within SMc00460 at 347.548 kb on - strand, within SMc00460 at 347.548 kb on - strand, within SMc00460 at 347.665 kb on + strand, within SMc00460 at 347.666 kb on - strand, within SMc00460 at 347.666 kb on - strand, within SMc00460 at 347.773 kb on + strand, within SMc00460 at 347.773 kb on + strand, within SMc00460 at 347.774 kb on - strand, within SMc00460 at 347.774 kb on - strand, within SMc00460 at 347.774 kb on - strand, within SMc00460 at 347.774 kb on - strand at 347.889 kb on + strand, within SMc00460 at 348.028 kb on + strand, within SMc00460 at 348.029 kb on - strand, within SMc00460 at 348.073 kb on + strand, within SMc00460 at 348.074 kb on - strand, within SMc00460 at 348.121 kb on + strand, within SMc00460 at 348.121 kb on + strand, within SMc00460 at 348.232 kb on + strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 346,132 + SMc00395 0.79 +0.4 346,200 - SMc00395 0.90 -0.1 346,223 + -0.4 346,223 + +0.4 346,223 + +0.3 346,224 - -0.5 346,224 - +0.5 346,224 - +0.2 346,355 - SMc00396 0.20 +1.4 346,507 + SMc00396 0.54 -1.6 346,507 + SMc00396 0.54 -0.5 346,507 + SMc00396 0.54 -0.8 346,508 - SMc00396 0.54 -0.3 346,798 + +1.0 346,799 - -0.8 346,799 - +0.3 346,864 + -0.4 346,864 + +0.2 346,865 - +0.1 346,865 - -0.9 346,866 + -0.2 346,866 + -0.2 346,866 + -1.3 346,866 + +1.3 346,866 + +0.0 346,866 + +0.2 346,866 + -0.6 346,866 + -0.6 346,867 - -1.0 346,867 - +0.1 346,867 - +0.4 346,867 - -0.3 346,867 - +0.2 346,875 + +0.4 346,994 - SMc00397 0.23 -0.1 347,162 - SMc00397 0.53 +0.5 347,162 - SMc00397 0.53 +0.6 347,162 - SMc00397 0.53 +1.4 347,170 + SMc00397 0.54 +0.1 347,171 - SMc00397 0.54 +0.8 347,302 + SMc00397 0.78 -0.2 347,377 + -0.3 347,378 - +0.1 347,495 - SMc00460 0.10 +0.1 347,548 - SMc00460 0.15 +0.3 347,548 - SMc00460 0.15 -0.8 347,665 + SMc00460 0.25 +0.2 347,666 - SMc00460 0.26 -1.0 347,666 - SMc00460 0.26 -1.8 347,773 + SMc00460 0.35 -0.4 347,773 + SMc00460 0.35 -0.5 347,774 - SMc00460 0.35 +0.1 347,774 - SMc00460 0.35 -0.2 347,774 - SMc00460 0.35 +0.5 347,774 - +0.2 347,889 + SMc00460 0.45 +0.3 348,028 + SMc00460 0.57 -0.4 348,029 - SMc00460 0.58 +0.7 348,073 + SMc00460 0.61 -0.5 348,074 - SMc00460 0.62 -0.7 348,121 + SMc00460 0.66 -0.0 348,121 + SMc00460 0.66 -0.2 348,232 + SMc00460 0.75 +1.4 348,233 - SMc00460 0.76 +0.1 348,233 - SMc00460 0.76 -1.1 348,233 - SMc00460 0.76 +0.2 348,233 - SMc00460 0.76 +0.3 348,233 - SMc00460 0.76 -0.1
Or see this region's nucleotide sequence