Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1297 and SMa1299 are separated by 251 nucleotides SMa1299 and SMa1301 are separated by 34 nucleotides
SMa1297: SMa1297 - hypothetical protein, at 708,125 to 708,802
SMa1297
SMa1299: SMa1299 - TetR family transcriptional regulator, at 709,054 to 709,665
SMa1299
SMa1301: SMa1301 - Permease, at 709,700 to 710,926
SMa1301
Position (kb) 709
710 Strain fitness (log2 ratio) -1
0
1 at 708.145 kb on + strand at 708.215 kb on + strand, within SMa1297 at 708.375 kb on + strand, within SMa1297 at 708.375 kb on + strand, within SMa1297 at 708.376 kb on - strand, within SMa1297 at 708.699 kb on - strand, within SMa1297 at 708.774 kb on - strand at 708.774 kb on - strand at 708.895 kb on - strand at 708.969 kb on + strand at 709.214 kb on + strand, within SMa1299 at 709.215 kb on - strand, within SMa1299 at 709.215 kb on - strand, within SMa1299 at 709.215 kb on - strand, within SMa1299 at 709.215 kb on - strand, within SMa1299 at 709.216 kb on + strand, within SMa1299 at 709.216 kb on + strand, within SMa1299 at 709.216 kb on + strand, within SMa1299 at 709.216 kb on + strand, within SMa1299 at 709.217 kb on - strand, within SMa1299 at 709.217 kb on - strand, within SMa1299 at 709.217 kb on - strand, within SMa1299 at 709.217 kb on - strand, within SMa1299 at 709.217 kb on - strand, within SMa1299 at 709.218 kb on + strand, within SMa1299 at 709.269 kb on + strand, within SMa1299 at 709.318 kb on - strand, within SMa1299 at 709.318 kb on - strand, within SMa1299 at 709.355 kb on - strand, within SMa1299 at 709.808 kb on + strand at 709.809 kb on - strand at 709.809 kb on - strand at 709.810 kb on + strand at 709.810 kb on + strand at 709.810 kb on + strand at 709.810 kb on + strand at 709.810 kb on + strand at 709.810 kb on + strand at 709.811 kb on - strand at 709.811 kb on - strand at 709.811 kb on - strand at 709.981 kb on + strand, within SMa1301 at 709.982 kb on - strand, within SMa1301 at 710.137 kb on + strand, within SMa1301 at 710.265 kb on + strand, within SMa1301 at 710.266 kb on - strand, within SMa1301 at 710.378 kb on + strand, within SMa1301 at 710.432 kb on + strand, within SMa1301 at 710.432 kb on + strand, within SMa1301
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 708,145 + -0.3 708,215 + SMa1297 0.13 -0.0 708,375 + SMa1297 0.37 -1.3 708,375 + SMa1297 0.37 +0.3 708,376 - SMa1297 0.37 +0.3 708,699 - SMa1297 0.85 +0.8 708,774 - +0.5 708,774 - +0.3 708,895 - +0.6 708,969 + -0.3 709,214 + SMa1299 0.26 +0.1 709,215 - SMa1299 0.26 -1.3 709,215 - SMa1299 0.26 +0.1 709,215 - SMa1299 0.26 +0.7 709,215 - SMa1299 0.26 -0.7 709,216 + SMa1299 0.26 -0.4 709,216 + SMa1299 0.26 -0.3 709,216 + SMa1299 0.26 +0.8 709,216 + SMa1299 0.26 -0.0 709,217 - SMa1299 0.27 +0.3 709,217 - SMa1299 0.27 -0.2 709,217 - SMa1299 0.27 +1.2 709,217 - SMa1299 0.27 -0.4 709,217 - SMa1299 0.27 -1.0 709,218 + SMa1299 0.27 -0.6 709,269 + SMa1299 0.35 -0.4 709,318 - SMa1299 0.43 -1.1 709,318 - SMa1299 0.43 -1.0 709,355 - SMa1299 0.49 -0.5 709,808 + -0.1 709,809 - -0.7 709,809 - +0.6 709,810 + -0.3 709,810 + +0.0 709,810 + -0.7 709,810 + -1.4 709,810 + -0.2 709,810 + -0.4 709,811 - -0.9 709,811 - +0.2 709,811 - -0.1 709,981 + SMa1301 0.23 -0.7 709,982 - SMa1301 0.23 +0.4 710,137 + SMa1301 0.36 -0.3 710,265 + SMa1301 0.46 -1.1 710,266 - SMa1301 0.46 -0.4 710,378 + SMa1301 0.55 +0.1 710,432 + SMa1301 0.60 -0.1 710,432 + SMa1301 0.60 +0.0
Or see this region's nucleotide sequence