Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1057 and SMa1058 are separated by 121 nucleotides SMa1058 and SMa1060 are separated by 301 nucleotides SMa1060 and SMa1062 overlap by 4 nucleotides SMa1062 and SMa1063 overlap by 65 nucleotides
SMa1057: SMa1057 - hypothetical protein, at 577,812 to 579,110
SMa1057
SMa1058: SMa1058 - hypothetical protein, at 579,232 to 579,684
SMa1058
SMa1060: SMa1060 - hypothetical protein, at 579,986 to 581,353
SMa1060
SMa1062: SMa1062 - hypothetical protein, at 581,350 to 582,180
SMa1062
SMa1063: SMa1063 - hypothetical protein, at 582,116 to 582,367
SMa1063
Position (kb) 579
580
581
582 Strain fitness (log2 ratio) -1
0
1 at 579.064 kb on - strand at 579.102 kb on - strand at 579.102 kb on - strand at 579.102 kb on - strand at 579.102 kb on - strand at 579.102 kb on - strand at 579.104 kb on + strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.254 kb on + strand at 579.507 kb on + strand, within SMa1058 at 579.508 kb on - strand, within SMa1058 at 579.615 kb on - strand, within SMa1058 at 579.648 kb on - strand at 579.743 kb on + strand at 579.743 kb on + strand at 579.744 kb on - strand at 579.980 kb on + strand at 579.981 kb on - strand at 580.050 kb on + strand at 580.050 kb on + strand at 580.051 kb on - strand at 580.051 kb on - strand at 580.068 kb on + strand at 580.068 kb on + strand at 580.069 kb on - strand at 580.069 kb on - strand at 580.231 kb on + strand, within SMa1060 at 580.246 kb on - strand, within SMa1060 at 580.246 kb on - strand, within SMa1060 at 580.246 kb on - strand, within SMa1060 at 580.246 kb on - strand, within SMa1060 at 580.246 kb on - strand, within SMa1060 at 580.308 kb on + strand, within SMa1060 at 580.308 kb on + strand, within SMa1060 at 580.356 kb on + strand, within SMa1060 at 580.365 kb on + strand, within SMa1060 at 580.365 kb on + strand, within SMa1060 at 580.366 kb on - strand, within SMa1060 at 580.366 kb on - strand, within SMa1060 at 580.366 kb on - strand, within SMa1060 at 580.387 kb on + strand, within SMa1060 at 580.387 kb on + strand, within SMa1060 at 580.387 kb on + strand, within SMa1060 at 580.635 kb on + strand, within SMa1060 at 580.677 kb on + strand, within SMa1060 at 580.756 kb on - strand, within SMa1060 at 580.780 kb on - strand, within SMa1060 at 580.882 kb on + strand, within SMa1060 at 580.883 kb on - strand, within SMa1060 at 580.979 kb on - strand, within SMa1060 at 580.987 kb on - strand, within SMa1060 at 580.988 kb on + strand, within SMa1060 at 581.010 kb on + strand, within SMa1060 at 581.010 kb on + strand, within SMa1060 at 581.011 kb on - strand, within SMa1060 at 581.045 kb on + strand, within SMa1060 at 581.175 kb on + strand, within SMa1060 at 581.176 kb on - strand, within SMa1060 at 581.208 kb on + strand, within SMa1060 at 581.208 kb on + strand, within SMa1060 at 581.209 kb on - strand, within SMa1060 at 581.220 kb on + strand at 581.244 kb on + strand at 581.244 kb on + strand at 581.244 kb on + strand at 581.244 kb on + strand at 581.249 kb on - strand at 581.251 kb on - strand at 581.251 kb on - strand at 581.356 kb on + strand at 581.356 kb on + strand at 581.414 kb on + strand at 581.429 kb on + strand at 581.429 kb on + strand at 581.429 kb on + strand at 581.560 kb on - strand, within SMa1062 at 581.586 kb on - strand, within SMa1062 at 581.639 kb on + strand, within SMa1062 at 581.639 kb on + strand, within SMa1062 at 581.639 kb on + strand, within SMa1062 at 581.640 kb on - strand, within SMa1062 at 581.681 kb on + strand, within SMa1062 at 581.827 kb on - strand, within SMa1062 at 581.984 kb on - strand, within SMa1062 at 581.984 kb on - strand, within SMa1062 at 582.005 kb on + strand, within SMa1062 at 582.024 kb on - strand, within SMa1062 at 582.039 kb on - strand, within SMa1062 at 582.140 kb on + strand at 582.200 kb on - strand, within SMa1063 at 582.280 kb on + strand, within SMa1063 at 582.281 kb on - strand, within SMa1063
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 579,064 - +0.5 579,102 - +0.7 579,102 - +1.3 579,102 - +1.7 579,102 - +1.2 579,102 - +1.4 579,104 + +0.3 579,105 - +0.6 579,105 - -0.2 579,105 - -0.1 579,254 + +0.7 579,507 + SMa1058 0.61 -0.2 579,508 - SMa1058 0.61 +0.7 579,615 - SMa1058 0.85 +0.9 579,648 - -0.6 579,743 + +0.1 579,743 + -0.0 579,744 - -0.6 579,980 + -0.2 579,981 - +1.0 580,050 + -1.3 580,050 + -0.3 580,051 - -0.7 580,051 - -0.1 580,068 + +0.7 580,068 + -0.9 580,069 - -0.8 580,069 - +0.2 580,231 + SMa1060 0.18 -0.3 580,246 - SMa1060 0.19 +0.4 580,246 - SMa1060 0.19 -0.1 580,246 - SMa1060 0.19 -0.3 580,246 - SMa1060 0.19 -1.1 580,246 - SMa1060 0.19 +0.2 580,308 + SMa1060 0.24 -1.0 580,308 + SMa1060 0.24 -0.2 580,356 + SMa1060 0.27 -1.2 580,365 + SMa1060 0.28 -0.2 580,365 + SMa1060 0.28 -0.3 580,366 - SMa1060 0.28 +0.1 580,366 - SMa1060 0.28 +0.0 580,366 - SMa1060 0.28 -0.1 580,387 + SMa1060 0.29 -1.4 580,387 + SMa1060 0.29 -0.4 580,387 + SMa1060 0.29 +0.2 580,635 + SMa1060 0.47 +0.3 580,677 + SMa1060 0.51 +0.0 580,756 - SMa1060 0.56 +0.1 580,780 - SMa1060 0.58 -0.1 580,882 + SMa1060 0.65 -0.1 580,883 - SMa1060 0.66 -0.4 580,979 - SMa1060 0.73 -0.3 580,987 - SMa1060 0.73 -1.3 580,988 + SMa1060 0.73 -0.1 581,010 + SMa1060 0.75 -0.5 581,010 + SMa1060 0.75 +1.7 581,011 - SMa1060 0.75 -0.4 581,045 + SMa1060 0.77 -0.2 581,175 + SMa1060 0.87 -0.1 581,176 - SMa1060 0.87 -0.1 581,208 + SMa1060 0.89 -1.1 581,208 + SMa1060 0.89 +0.1 581,209 - SMa1060 0.89 -0.7 581,220 + -1.3 581,244 + -0.4 581,244 + +0.5 581,244 + -1.1 581,244 + -0.7 581,249 - +0.2 581,251 - -0.2 581,251 - -0.9 581,356 + +0.2 581,356 + -1.4 581,414 + -0.5 581,429 + +0.0 581,429 + -0.3 581,429 + +0.6 581,560 - SMa1062 0.25 -0.7 581,586 - SMa1062 0.28 +0.3 581,639 + SMa1062 0.35 +0.3 581,639 + SMa1062 0.35 +0.1 581,639 + SMa1062 0.35 -0.6 581,640 - SMa1062 0.35 +0.7 581,681 + SMa1062 0.40 +0.2 581,827 - SMa1062 0.57 +0.7 581,984 - SMa1062 0.76 +0.3 581,984 - SMa1062 0.76 -0.2 582,005 + SMa1062 0.79 -0.4 582,024 - SMa1062 0.81 -0.3 582,039 - SMa1062 0.83 -0.6 582,140 + +0.5 582,200 - SMa1063 0.33 +0.1 582,280 + SMa1063 0.65 +0.3 582,281 - SMa1063 0.65 -0.0
Or see this region's nucleotide sequence