Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0020 and SMa0021 are separated by 749 nucleotides SMa0021 and SMa0022 are separated by 621 nucleotides SMa0022 and SMa5014 are separated by 18 nucleotides
SMa0020: SMa0020 - transposase TRm2011-2b, at 13,227 to 13,700
SMa0020
SMa0021: SMa0021 - hypothetical protein, at 14,450 to 15,094
SMa0021
SMa0022: SMa0022 - tRNA-Sec, at 15,716 to 15,807
SMa0022
SMa5014: SMa5014 - hypothetical protein, at 15,826 to 16,209
SMa5014
Position (kb) 14
15
16 Strain fitness (log2 ratio) -1
0
1
2 at 13.731 kb on + strand at 13.731 kb on + strand at 13.908 kb on + strand at 13.908 kb on + strand at 13.919 kb on - strand at 14.048 kb on + strand at 14.049 kb on - strand at 14.049 kb on - strand at 14.049 kb on - strand at 14.049 kb on - strand at 14.101 kb on - strand at 14.101 kb on - strand at 14.101 kb on - strand at 14.101 kb on - strand at 14.101 kb on - strand at 14.181 kb on - strand at 14.287 kb on + strand at 14.287 kb on + strand at 14.288 kb on - strand at 14.319 kb on + strand at 14.320 kb on - strand at 14.324 kb on + strand at 14.325 kb on - strand at 14.325 kb on - strand at 14.327 kb on + strand at 14.327 kb on + strand at 14.327 kb on + strand at 14.327 kb on + strand at 14.328 kb on - strand at 14.328 kb on - strand at 14.328 kb on - strand at 14.446 kb on + strand at 14.496 kb on - strand at 14.705 kb on + strand, within SMa0021 at 14.705 kb on + strand, within SMa0021 at 14.705 kb on + strand, within SMa0021 at 14.800 kb on - strand, within SMa0021 at 14.838 kb on - strand, within SMa0021 at 14.838 kb on - strand, within SMa0021 at 14.838 kb on - strand, within SMa0021 at 14.960 kb on - strand, within SMa0021 at 15.010 kb on + strand, within SMa0021 at 15.010 kb on + strand, within SMa0021 at 15.010 kb on + strand, within SMa0021 at 15.010 kb on + strand, within SMa0021 at 15.082 kb on - strand at 15.096 kb on + strand at 15.110 kb on + strand at 15.138 kb on + strand at 15.138 kb on + strand at 15.139 kb on - strand at 15.282 kb on + strand at 15.448 kb on + strand at 15.448 kb on + strand at 15.474 kb on + strand at 15.475 kb on - strand at 15.478 kb on + strand at 15.478 kb on + strand at 15.478 kb on + strand at 15.478 kb on + strand at 15.478 kb on + strand at 15.494 kb on + strand at 15.495 kb on - strand at 15.495 kb on - strand at 15.495 kb on - strand at 15.495 kb on - strand at 15.542 kb on + strand at 15.550 kb on + strand at 15.550 kb on + strand at 15.621 kb on + strand at 15.647 kb on - strand at 15.877 kb on + strand, within SMa5014 at 15.958 kb on + strand, within SMa5014 at 15.959 kb on - strand, within SMa5014 at 15.959 kb on - strand, within SMa5014 at 16.049 kb on - strand, within SMa5014 at 16.071 kb on - strand, within SMa5014
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 13,731 + +0.0 13,731 + -0.3 13,908 + +0.1 13,908 + +1.0 13,919 - -0.2 14,048 + +0.4 14,049 - -1.2 14,049 - +0.8 14,049 - -0.2 14,049 - -0.5 14,101 - -0.8 14,101 - -0.3 14,101 - +0.0 14,101 - +0.0 14,101 - +0.2 14,181 - -0.4 14,287 + +0.1 14,287 + +1.2 14,288 - -0.0 14,319 + -0.0 14,320 - -0.6 14,324 + -1.1 14,325 - -1.0 14,325 - -0.1 14,327 + +0.6 14,327 + +0.3 14,327 + -0.1 14,327 + +0.3 14,328 - -0.1 14,328 - +0.5 14,328 - -0.0 14,446 + -0.4 14,496 - -0.0 14,705 + SMa0021 0.40 -0.2 14,705 + SMa0021 0.40 +1.6 14,705 + SMa0021 0.40 +1.9 14,800 - SMa0021 0.54 -0.8 14,838 - SMa0021 0.60 -0.1 14,838 - SMa0021 0.60 -0.0 14,838 - SMa0021 0.60 +0.7 14,960 - SMa0021 0.79 -0.3 15,010 + SMa0021 0.87 +0.2 15,010 + SMa0021 0.87 -0.1 15,010 + SMa0021 0.87 +0.1 15,010 + SMa0021 0.87 +1.1 15,082 - +0.3 15,096 + +0.4 15,110 + +0.0 15,138 + -0.4 15,138 + +1.0 15,139 - -0.0 15,282 + +0.7 15,448 + +1.5 15,448 + +0.3 15,474 + -0.1 15,475 - +0.2 15,478 + -0.1 15,478 + -0.3 15,478 + -0.8 15,478 + -0.5 15,478 + +0.2 15,494 + -0.1 15,495 - +0.5 15,495 - +1.4 15,495 - -0.3 15,495 - +0.1 15,542 + -0.1 15,550 + -1.7 15,550 + +0.7 15,621 + -0.1 15,647 - -0.8 15,877 + SMa5014 0.13 -0.3 15,958 + SMa5014 0.34 -0.7 15,959 - SMa5014 0.35 -0.0 15,959 - SMa5014 0.35 -0.9 16,049 - SMa5014 0.58 +0.8 16,071 - SMa5014 0.64 -0.2
Or see this region's nucleotide sequence