Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21242 and SM_b21243 are separated by 175 nucleotides SM_b21243 and SM_b21244 are separated by 230 nucleotides
SM_b21242: SM_b21242 - glycosyltransferase, at 809,385 to 810,509
_b21242
SM_b21243: SM_b21243 - sulfotransferase, at 810,685 to 811,611
_b21243
SM_b21244: SM_b21244 - membrane protein, polysaccharide transporter, at 811,842 to 813,131
_b21244
Position (kb) 810
811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 809.721 kb on + strand, within SM_b21242 at 810.573 kb on + strand at 810.624 kb on + strand at 810.625 kb on - strand at 810.625 kb on - strand at 810.629 kb on + strand at 810.629 kb on + strand at 810.629 kb on + strand at 810.629 kb on + strand at 810.629 kb on + strand at 810.630 kb on - strand at 810.812 kb on + strand, within SM_b21243 at 810.813 kb on - strand, within SM_b21243 at 811.208 kb on + strand, within SM_b21243 at 811.218 kb on - strand, within SM_b21243 at 811.310 kb on + strand, within SM_b21243 at 811.310 kb on + strand, within SM_b21243 at 811.310 kb on + strand, within SM_b21243 at 811.311 kb on - strand, within SM_b21243 at 811.311 kb on - strand, within SM_b21243 at 811.371 kb on - strand, within SM_b21243 at 811.371 kb on - strand, within SM_b21243 at 811.391 kb on + strand, within SM_b21243 at 811.395 kb on - strand, within SM_b21243 at 811.406 kb on + strand, within SM_b21243 at 811.433 kb on - strand, within SM_b21243 at 811.433 kb on - strand, within SM_b21243 at 811.669 kb on - strand at 811.677 kb on - strand at 811.744 kb on + strand at 811.941 kb on + strand at 811.942 kb on - strand at 812.007 kb on + strand, within SM_b21244 at 812.143 kb on - strand, within SM_b21244 at 812.161 kb on + strand, within SM_b21244 at 812.162 kb on - strand, within SM_b21244 at 812.331 kb on + strand, within SM_b21244 at 812.341 kb on + strand, within SM_b21244 at 812.342 kb on - strand, within SM_b21244 at 812.372 kb on - strand, within SM_b21244 at 812.471 kb on + strand, within SM_b21244 at 812.583 kb on + strand, within SM_b21244 at 812.584 kb on - strand, within SM_b21244 at 812.584 kb on - strand, within SM_b21244
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 809,721 + SM_b21242 0.30 +1.1 810,573 + -0.2 810,624 + -0.0 810,625 - -0.9 810,625 - +0.3 810,629 + +0.9 810,629 + -0.2 810,629 + -0.2 810,629 + -0.2 810,629 + +2.2 810,630 - -0.7 810,812 + SM_b21243 0.14 +0.8 810,813 - SM_b21243 0.14 +0.2 811,208 + SM_b21243 0.56 -3.1 811,218 - SM_b21243 0.57 +1.3 811,310 + SM_b21243 0.67 -1.3 811,310 + SM_b21243 0.67 +1.5 811,310 + SM_b21243 0.67 +0.1 811,311 - SM_b21243 0.68 +1.1 811,311 - SM_b21243 0.68 +0.8 811,371 - SM_b21243 0.74 +0.6 811,371 - SM_b21243 0.74 -0.5 811,391 + SM_b21243 0.76 +0.4 811,395 - SM_b21243 0.77 -0.0 811,406 + SM_b21243 0.78 +0.4 811,433 - SM_b21243 0.81 +0.7 811,433 - SM_b21243 0.81 +0.5 811,669 - -0.4 811,677 - +0.3 811,744 + -0.5 811,941 + -0.0 811,942 - -0.5 812,007 + SM_b21244 0.13 +0.3 812,143 - SM_b21244 0.23 -2.0 812,161 + SM_b21244 0.25 -0.0 812,162 - SM_b21244 0.25 -0.6 812,331 + SM_b21244 0.38 -0.0 812,341 + SM_b21244 0.39 -0.0 812,342 - SM_b21244 0.39 -0.5 812,372 - SM_b21244 0.41 +0.5 812,471 + SM_b21244 0.49 +1.5 812,583 + SM_b21244 0.57 -0.8 812,584 - SM_b21244 0.58 -1.8 812,584 - SM_b21244 0.58 -0.1
Or see this region's nucleotide sequence