Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20554 and SM_b20555 are separated by 3 nucleotides SM_b20555 and SM_b20556 are separated by 456 nucleotides
SM_b20554: SM_b20554 - hypothetical protein, at 579,454 to 579,963
_b20554
SM_b20555: SM_b20555 - hypothetical protein, at 579,967 to 580,188
_b20555
SM_b20556: SM_b20556 - hypothetical protein, at 580,645 to 581,325
_b20556
Position (kb) 580
581
582 Strain fitness (log2 ratio) -2
-1
0
1
2 at 579.696 kb on - strand, within SM_b20554 at 579.912 kb on + strand, within SM_b20554 at 579.913 kb on - strand at 579.913 kb on - strand at 580.072 kb on + strand, within SM_b20555 at 580.073 kb on - strand, within SM_b20555 at 580.077 kb on + strand, within SM_b20555 at 580.077 kb on + strand, within SM_b20555 at 580.078 kb on - strand, within SM_b20555 at 580.078 kb on - strand, within SM_b20555 at 580.227 kb on + strand at 580.227 kb on + strand at 580.228 kb on - strand at 580.228 kb on - strand at 580.262 kb on - strand at 580.348 kb on + strand at 580.349 kb on - strand at 580.385 kb on + strand at 580.539 kb on + strand at 580.555 kb on - strand at 580.650 kb on + strand at 580.650 kb on + strand at 580.683 kb on + strand at 580.683 kb on + strand at 580.683 kb on + strand at 580.746 kb on + strand, within SM_b20556 at 580.978 kb on + strand, within SM_b20556 at 580.978 kb on + strand, within SM_b20556 at 580.978 kb on + strand, within SM_b20556 at 580.991 kb on + strand, within SM_b20556 at 580.992 kb on - strand, within SM_b20556 at 580.996 kb on - strand, within SM_b20556 at 581.043 kb on + strand, within SM_b20556 at 581.062 kb on + strand, within SM_b20556 at 581.077 kb on + strand, within SM_b20556 at 581.077 kb on + strand, within SM_b20556 at 581.079 kb on + strand, within SM_b20556 at 581.080 kb on - strand, within SM_b20556 at 581.080 kb on - strand, within SM_b20556 at 581.107 kb on + strand, within SM_b20556 at 581.108 kb on - strand, within SM_b20556 at 581.119 kb on - strand, within SM_b20556 at 581.149 kb on + strand, within SM_b20556 at 581.150 kb on - strand, within SM_b20556 at 581.206 kb on + strand, within SM_b20556 at 581.206 kb on + strand, within SM_b20556 at 581.207 kb on - strand, within SM_b20556 at 581.301 kb on + strand at 581.302 kb on - strand at 581.327 kb on + strand at 581.328 kb on - strand at 581.328 kb on - strand at 581.328 kb on - strand at 581.328 kb on - strand at 581.361 kb on + strand at 581.418 kb on + strand at 581.472 kb on + strand at 581.472 kb on + strand at 581.472 kb on + strand at 581.473 kb on - strand at 581.473 kb on - strand at 581.473 kb on - strand at 581.473 kb on - strand at 581.659 kb on + strand at 581.660 kb on - strand at 581.660 kb on - strand at 581.708 kb on + strand at 581.709 kb on - strand at 581.911 kb on + strand at 581.912 kb on - strand at 581.912 kb on - strand at 581.912 kb on - strand at 581.914 kb on + strand at 581.934 kb on - strand at 582.037 kb on + strand at 582.037 kb on + strand at 582.037 kb on + strand at 582.038 kb on - strand at 582.077 kb on + strand at 582.108 kb on + strand at 582.109 kb on - strand at 582.109 kb on - strand at 582.109 kb on - strand at 582.114 kb on + strand at 582.115 kb on - strand at 582.120 kb on + strand at 582.121 kb on - strand at 582.121 kb on - strand at 582.132 kb on + strand at 582.132 kb on + strand at 582.132 kb on + strand at 582.133 kb on - strand at 582.135 kb on + strand at 582.135 kb on + strand at 582.136 kb on - strand at 582.136 kb on - strand at 582.162 kb on + strand at 582.253 kb on - strand at 582.253 kb on - strand at 582.284 kb on + strand at 582.285 kb on - strand at 582.301 kb on + strand at 582.302 kb on - strand at 582.302 kb on - strand at 582.305 kb on + strand at 582.306 kb on - strand at 582.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 579,696 - SM_b20554 0.47 +0.3 579,912 + SM_b20554 0.90 +0.4 579,913 - -0.4 579,913 - +1.3 580,072 + SM_b20555 0.47 -0.0 580,073 - SM_b20555 0.48 +0.1 580,077 + SM_b20555 0.50 -0.0 580,077 + SM_b20555 0.50 -1.7 580,078 - SM_b20555 0.50 +1.1 580,078 - SM_b20555 0.50 +0.9 580,227 + +0.4 580,227 + -0.1 580,228 - -1.0 580,228 - -0.4 580,262 - -0.4 580,348 + +0.0 580,349 - +0.0 580,385 + +2.0 580,539 + +0.2 580,555 - +0.1 580,650 + -0.5 580,650 + -0.1 580,683 + -0.9 580,683 + -0.5 580,683 + -0.6 580,746 + SM_b20556 0.15 +0.9 580,978 + SM_b20556 0.49 -0.3 580,978 + SM_b20556 0.49 -0.1 580,978 + SM_b20556 0.49 -0.8 580,991 + SM_b20556 0.51 -0.4 580,992 - SM_b20556 0.51 -0.6 580,996 - SM_b20556 0.52 -0.7 581,043 + SM_b20556 0.58 +1.1 581,062 + SM_b20556 0.61 -0.1 581,077 + SM_b20556 0.63 -0.5 581,077 + SM_b20556 0.63 +0.6 581,079 + SM_b20556 0.64 -0.9 581,080 - SM_b20556 0.64 -1.0 581,080 - SM_b20556 0.64 -0.7 581,107 + SM_b20556 0.68 -0.8 581,108 - SM_b20556 0.68 -0.6 581,119 - SM_b20556 0.70 -0.5 581,149 + SM_b20556 0.74 -0.8 581,150 - SM_b20556 0.74 -0.3 581,206 + SM_b20556 0.82 +0.5 581,206 + SM_b20556 0.82 -0.7 581,207 - SM_b20556 0.83 +0.6 581,301 + -0.1 581,302 - +0.2 581,327 + -0.0 581,328 - +0.1 581,328 - +0.2 581,328 - +0.4 581,328 - -0.6 581,361 + -0.7 581,418 + +0.5 581,472 + -0.6 581,472 + -0.1 581,472 + -1.6 581,473 - -0.7 581,473 - -0.0 581,473 - -0.2 581,473 - -0.4 581,659 + -0.3 581,660 - +0.8 581,660 - +0.9 581,708 + -0.1 581,709 - +1.3 581,911 + +0.3 581,912 - -0.2 581,912 - -0.7 581,912 - -1.1 581,914 + +1.3 581,934 - +0.3 582,037 + -0.9 582,037 + -0.0 582,037 + +0.2 582,038 - -0.2 582,077 + -0.4 582,108 + -0.3 582,109 - -0.8 582,109 - -0.5 582,109 - +0.4 582,114 + +1.6 582,115 - +0.2 582,120 + +0.0 582,121 - -0.7 582,121 - +2.2 582,132 + -1.1 582,132 + -2.0 582,132 + -0.7 582,133 - +0.5 582,135 + -0.8 582,135 + +0.3 582,136 - +1.0 582,136 - -0.4 582,162 + -0.8 582,253 - +1.4 582,253 - +0.3 582,284 + -1.0 582,285 - -0.4 582,301 + -0.4 582,302 - +0.2 582,302 - -0.1 582,305 + +0.5 582,306 - -1.6 582,306 - -0.0
Or see this region's nucleotide sequence