Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20423 and SM_b20424 are separated by 119 nucleotides SM_b20424 and SM_b20425 are separated by 163 nucleotides SM_b20425 and SM_b20426 are separated by 209 nucleotides
SM_b20423: SM_b20423 - hypothetical protein, at 437,134 to 438,510
_b20423
SM_b20424: SM_b20424 - succinate-semialdehyde dehydrogenase, at 438,630 to 440,126
_b20424
SM_b20425: SM_b20425 - transcriptional regulator, at 440,290 to 440,784
_b20425
SM_b20426: SM_b20426 - transcriptional regulator, at 440,994 to 442,274
_b20426
Position (kb) 438
439
440
441 Strain fitness (log2 ratio) -2
-1
0
1
2 at 437.678 kb on + strand, within SM_b20423 at 437.748 kb on + strand, within SM_b20423 at 437.753 kb on + strand, within SM_b20423 at 437.753 kb on + strand, within SM_b20423 at 437.754 kb on - strand, within SM_b20423 at 437.754 kb on - strand, within SM_b20423 at 437.786 kb on + strand, within SM_b20423 at 437.900 kb on + strand, within SM_b20423 at 437.901 kb on - strand, within SM_b20423 at 437.948 kb on + strand, within SM_b20423 at 437.948 kb on + strand, within SM_b20423 at 437.949 kb on - strand, within SM_b20423 at 437.952 kb on - strand, within SM_b20423 at 438.053 kb on + strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.111 kb on - strand, within SM_b20423 at 438.113 kb on + strand, within SM_b20423 at 438.168 kb on - strand, within SM_b20423 at 438.248 kb on + strand, within SM_b20423 at 438.248 kb on + strand, within SM_b20423 at 438.257 kb on + strand, within SM_b20423 at 438.258 kb on - strand, within SM_b20423 at 438.260 kb on + strand, within SM_b20423 at 438.261 kb on - strand, within SM_b20423 at 438.315 kb on - strand, within SM_b20423 at 438.372 kb on + strand, within SM_b20423 at 438.383 kb on + strand at 438.383 kb on + strand at 438.384 kb on - strand at 438.565 kb on - strand at 438.652 kb on - strand at 438.656 kb on - strand at 438.851 kb on - strand, within SM_b20424 at 438.877 kb on - strand, within SM_b20424 at 439.199 kb on - strand, within SM_b20424 at 439.199 kb on - strand, within SM_b20424 at 439.259 kb on + strand, within SM_b20424 at 439.260 kb on - strand, within SM_b20424 at 439.260 kb on - strand, within SM_b20424 at 439.729 kb on + strand, within SM_b20424 at 439.729 kb on + strand, within SM_b20424 at 440.009 kb on + strand at 440.044 kb on + strand at 440.045 kb on - strand at 440.126 kb on + strand at 440.127 kb on - strand at 440.245 kb on + strand at 440.246 kb on - strand at 440.275 kb on + strand at 440.276 kb on - strand at 440.291 kb on + strand at 440.372 kb on + strand, within SM_b20425 at 440.373 kb on - strand, within SM_b20425 at 440.373 kb on - strand, within SM_b20425 at 440.381 kb on + strand, within SM_b20425 at 440.466 kb on + strand, within SM_b20425 at 440.466 kb on + strand, within SM_b20425 at 440.467 kb on - strand, within SM_b20425 at 440.467 kb on - strand, within SM_b20425 at 440.468 kb on + strand, within SM_b20425 at 440.468 kb on + strand, within SM_b20425 at 440.468 kb on + strand, within SM_b20425 at 440.468 kb on + strand, within SM_b20425 at 440.469 kb on - strand, within SM_b20425 at 440.469 kb on - strand, within SM_b20425 at 440.469 kb on - strand, within SM_b20425 at 440.728 kb on - strand, within SM_b20425 at 440.785 kb on + strand at 440.785 kb on + strand at 440.804 kb on + strand at 441.088 kb on + strand at 441.088 kb on + strand at 441.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 437,678 + SM_b20423 0.40 -0.2 437,748 + SM_b20423 0.45 -0.1 437,753 + SM_b20423 0.45 -0.1 437,753 + SM_b20423 0.45 +0.7 437,754 - SM_b20423 0.45 +0.8 437,754 - SM_b20423 0.45 -0.4 437,786 + SM_b20423 0.47 -0.5 437,900 + SM_b20423 0.56 -0.5 437,901 - SM_b20423 0.56 -1.1 437,948 + SM_b20423 0.59 +0.1 437,948 + SM_b20423 0.59 -0.4 437,949 - SM_b20423 0.59 +0.1 437,952 - SM_b20423 0.59 -0.4 438,053 + SM_b20423 0.67 -1.2 438,111 - SM_b20423 0.71 +0.0 438,111 - SM_b20423 0.71 -0.2 438,111 - SM_b20423 0.71 -0.4 438,113 + SM_b20423 0.71 -0.2 438,168 - SM_b20423 0.75 -0.5 438,248 + SM_b20423 0.81 +1.1 438,248 + SM_b20423 0.81 -0.2 438,257 + SM_b20423 0.82 -0.1 438,258 - SM_b20423 0.82 -1.0 438,260 + SM_b20423 0.82 +0.0 438,261 - SM_b20423 0.82 -0.6 438,315 - SM_b20423 0.86 -0.2 438,372 + SM_b20423 0.90 -1.6 438,383 + +0.2 438,383 + +2.2 438,384 - +0.4 438,565 - -0.3 438,652 - +1.0 438,656 - +0.8 438,851 - SM_b20424 0.15 -0.0 438,877 - SM_b20424 0.16 -0.3 439,199 - SM_b20424 0.38 -0.5 439,199 - SM_b20424 0.38 -1.2 439,259 + SM_b20424 0.42 -0.3 439,260 - SM_b20424 0.42 -0.6 439,260 - SM_b20424 0.42 -0.2 439,729 + SM_b20424 0.73 -1.6 439,729 + SM_b20424 0.73 -1.0 440,009 + +0.5 440,044 + +0.6 440,045 - -0.2 440,126 + -1.9 440,127 - +0.4 440,245 + -0.1 440,246 - -0.2 440,275 + -1.1 440,276 - +0.2 440,291 + -0.5 440,372 + SM_b20425 0.17 +0.1 440,373 - SM_b20425 0.17 -0.0 440,373 - SM_b20425 0.17 -0.7 440,381 + SM_b20425 0.18 -0.2 440,466 + SM_b20425 0.36 +0.5 440,466 + SM_b20425 0.36 +0.6 440,467 - SM_b20425 0.36 -0.8 440,467 - SM_b20425 0.36 +0.4 440,468 + SM_b20425 0.36 -0.4 440,468 + SM_b20425 0.36 -0.5 440,468 + SM_b20425 0.36 -0.5 440,468 + SM_b20425 0.36 -0.9 440,469 - SM_b20425 0.36 +0.0 440,469 - SM_b20425 0.36 +0.1 440,469 - SM_b20425 0.36 -0.5 440,728 - SM_b20425 0.88 -0.2 440,785 + +0.2 440,785 + +0.9 440,804 + +0.8 441,088 + +0.0 441,088 + +0.7 441,088 + -0.2
Or see this region's nucleotide sequence