Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20338 and SM_b20339 are separated by 88 nucleotides SM_b20339 and SM_b20340 are separated by 69 nucleotides SM_b20340 and SM_b20341 are separated by 204 nucleotides
SM_b20338: SM_b20338 - efflux protein, at 343,485 to 344,708
_b20338
SM_b20339: SM_b20339 - hypothetical protein, at 344,797 to 345,279
_b20339
SM_b20340: SM_b20340 - hypothetical protein, at 345,349 to 345,528
_b20340
SM_b20341: SM_b20341 - hypothetical protein, at 345,733 to 345,918
_b20341
Position (kb) 344
345
346 Strain fitness (log2 ratio) -1
0
1
2 at 343.844 kb on - strand, within SM_b20338 at 343.877 kb on - strand, within SM_b20338 at 343.877 kb on - strand, within SM_b20338 at 343.941 kb on + strand, within SM_b20338 at 343.941 kb on + strand, within SM_b20338 at 343.941 kb on + strand, within SM_b20338 at 343.941 kb on + strand, within SM_b20338 at 343.941 kb on + strand, within SM_b20338 at 343.942 kb on - strand, within SM_b20338 at 343.942 kb on - strand, within SM_b20338 at 343.944 kb on - strand, within SM_b20338 at 343.979 kb on - strand, within SM_b20338 at 343.979 kb on - strand, within SM_b20338 at 343.982 kb on + strand, within SM_b20338 at 343.982 kb on + strand, within SM_b20338 at 343.983 kb on - strand, within SM_b20338 at 344.045 kb on + strand, within SM_b20338 at 344.135 kb on + strand, within SM_b20338 at 344.649 kb on - strand at 344.822 kb on + strand at 344.928 kb on - strand, within SM_b20339 at 344.928 kb on - strand, within SM_b20339 at 344.997 kb on + strand, within SM_b20339 at 344.997 kb on + strand, within SM_b20339 at 344.997 kb on + strand, within SM_b20339 at 344.998 kb on - strand, within SM_b20339 at 345.193 kb on + strand, within SM_b20339 at 345.193 kb on + strand, within SM_b20339 at 345.193 kb on + strand, within SM_b20339 at 345.193 kb on + strand, within SM_b20339 at 345.194 kb on - strand, within SM_b20339 at 345.194 kb on - strand, within SM_b20339 at 345.496 kb on - strand, within SM_b20340 at 345.511 kb on + strand at 346.055 kb on + strand at 346.056 kb on - strand at 346.056 kb on - strand at 346.153 kb on - strand at 346.153 kb on - strand at 346.258 kb on - strand at 346.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 343,844 - SM_b20338 0.29 +0.2 343,877 - SM_b20338 0.32 +0.0 343,877 - SM_b20338 0.32 -0.4 343,941 + SM_b20338 0.37 +0.2 343,941 + SM_b20338 0.37 +0.6 343,941 + SM_b20338 0.37 +0.7 343,941 + SM_b20338 0.37 +0.8 343,941 + SM_b20338 0.37 -0.4 343,942 - SM_b20338 0.37 -0.8 343,942 - SM_b20338 0.37 +0.4 343,944 - SM_b20338 0.38 +1.9 343,979 - SM_b20338 0.40 -0.4 343,979 - SM_b20338 0.40 -0.2 343,982 + SM_b20338 0.41 -0.2 343,982 + SM_b20338 0.41 +1.6 343,983 - SM_b20338 0.41 -0.1 344,045 + SM_b20338 0.46 +1.6 344,135 + SM_b20338 0.53 +0.0 344,649 - +0.2 344,822 + +0.4 344,928 - SM_b20339 0.27 +0.3 344,928 - SM_b20339 0.27 +0.3 344,997 + SM_b20339 0.41 +2.4 344,997 + SM_b20339 0.41 +0.4 344,997 + SM_b20339 0.41 -0.0 344,998 - SM_b20339 0.42 -1.4 345,193 + SM_b20339 0.82 -0.1 345,193 + SM_b20339 0.82 -0.1 345,193 + SM_b20339 0.82 -0.4 345,193 + SM_b20339 0.82 +1.4 345,194 - SM_b20339 0.82 +0.6 345,194 - SM_b20339 0.82 +1.8 345,496 - SM_b20340 0.82 +0.9 345,511 + +1.3 346,055 + +0.3 346,056 - +0.8 346,056 - +0.2 346,153 - +0.2 346,153 - -0.8 346,258 - +0.1 346,272 - +1.3
Or see this region's nucleotide sequence