Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20115 and SM_b20116 are separated by 134 nucleotides SM_b20116 and SM_b20117 are separated by 129 nucleotides
SM_b20115: SM_b20115 - dihydroxy-acid dehydratase, at 126,396 to 128,117
_b20115
SM_b20116: SM_b20116 - hypothetical protein, at 128,252 to 130,456
_b20116
SM_b20117: SM_b20117 - sugar transferase, at 130,586 to 131,686
_b20117
Position (kb) 128
129
130
131 Strain fitness (log2 ratio) -1
0
1
2 at 127.430 kb on + strand, within SM_b20115 at 127.430 kb on + strand, within SM_b20115 at 127.431 kb on - strand, within SM_b20115 at 127.547 kb on - strand, within SM_b20115 at 127.622 kb on - strand, within SM_b20115 at 127.770 kb on + strand, within SM_b20115 at 128.127 kb on + strand at 128.128 kb on - strand at 128.159 kb on + strand at 128.159 kb on + strand at 128.159 kb on + strand at 128.160 kb on - strand at 128.160 kb on - strand at 128.160 kb on - strand at 128.160 kb on - strand at 128.469 kb on + strand at 128.518 kb on - strand, within SM_b20116 at 128.561 kb on + strand, within SM_b20116 at 128.561 kb on + strand, within SM_b20116 at 128.561 kb on + strand, within SM_b20116 at 128.561 kb on + strand, within SM_b20116 at 128.589 kb on + strand, within SM_b20116 at 128.590 kb on - strand, within SM_b20116 at 128.646 kb on + strand, within SM_b20116 at 128.706 kb on + strand, within SM_b20116 at 128.707 kb on - strand, within SM_b20116 at 128.795 kb on + strand, within SM_b20116 at 128.796 kb on - strand, within SM_b20116 at 128.901 kb on + strand, within SM_b20116 at 128.902 kb on - strand, within SM_b20116 at 129.042 kb on + strand, within SM_b20116 at 129.042 kb on + strand, within SM_b20116 at 129.042 kb on + strand, within SM_b20116 at 129.042 kb on + strand, within SM_b20116 at 129.051 kb on - strand, within SM_b20116 at 129.163 kb on - strand, within SM_b20116 at 129.276 kb on + strand, within SM_b20116 at 129.580 kb on + strand, within SM_b20116 at 129.580 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.592 kb on - strand, within SM_b20116 at 129.592 kb on - strand, within SM_b20116 at 129.592 kb on - strand, within SM_b20116 at 130.333 kb on + strand at 130.334 kb on - strand at 130.334 kb on - strand at 130.368 kb on + strand at 130.369 kb on - strand at 130.538 kb on + strand at 130.678 kb on - strand at 130.690 kb on - strand at 130.690 kb on - strand at 130.690 kb on - strand at 131.308 kb on - strand, within SM_b20117
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 127,430 + SM_b20115 0.60 +0.1 127,430 + SM_b20115 0.60 +0.7 127,431 - SM_b20115 0.60 -1.6 127,547 - SM_b20115 0.67 +1.6 127,622 - SM_b20115 0.71 -0.0 127,770 + SM_b20115 0.80 +0.3 128,127 + -0.3 128,128 - -0.3 128,159 + -0.4 128,159 + -0.6 128,159 + -1.3 128,160 - -0.3 128,160 - +0.5 128,160 - +0.2 128,160 - -1.3 128,469 + +0.4 128,518 - SM_b20116 0.12 +0.2 128,561 + SM_b20116 0.14 +0.5 128,561 + SM_b20116 0.14 +0.1 128,561 + SM_b20116 0.14 +0.5 128,561 + SM_b20116 0.14 +0.1 128,589 + SM_b20116 0.15 +1.2 128,590 - SM_b20116 0.15 -1.2 128,646 + SM_b20116 0.18 +0.3 128,706 + SM_b20116 0.21 +1.3 128,707 - SM_b20116 0.21 +1.7 128,795 + SM_b20116 0.25 +0.4 128,796 - SM_b20116 0.25 +0.2 128,901 + SM_b20116 0.29 +0.4 128,902 - SM_b20116 0.29 -0.0 129,042 + SM_b20116 0.36 +0.6 129,042 + SM_b20116 0.36 +0.8 129,042 + SM_b20116 0.36 -0.2 129,042 + SM_b20116 0.36 -0.2 129,051 - SM_b20116 0.36 +0.0 129,163 - SM_b20116 0.41 -0.5 129,276 + SM_b20116 0.46 +0.1 129,580 + SM_b20116 0.60 +0.1 129,580 + SM_b20116 0.60 -0.4 129,591 + SM_b20116 0.61 +2.3 129,591 + SM_b20116 0.61 +0.1 129,591 + SM_b20116 0.61 +0.1 129,591 + SM_b20116 0.61 +0.2 129,592 - SM_b20116 0.61 +0.3 129,592 - SM_b20116 0.61 +0.9 129,592 - SM_b20116 0.61 -0.9 130,333 + -1.0 130,334 - +0.5 130,334 - -1.1 130,368 + +0.0 130,369 - +0.2 130,538 + -0.9 130,678 - -0.2 130,690 - -0.6 130,690 - +0.7 130,690 - +0.7 131,308 - SM_b20117 0.66 +0.3
Or see this region's nucleotide sequence