Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20105

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20103 and SM_b20104 are separated by 75 nucleotidesSM_b20104 and SM_b20105 are separated by 101 nucleotidesSM_b20105 and SM_b20106 are separated by 179 nucleotidesSM_b20106 and SM_b20107 are separated by 67 nucleotides SM_b20103: SM_b20103 - FAD-dependent oxidoreductase, at 113,274 to 115,076 _b20103 SM_b20104: SM_b20104 - hypothetical protein, at 115,152 to 115,910 _b20104 SM_b20105: SM_b20105 - transcriptional regulator, at 116,012 to 116,644 _b20105 SM_b20106: SM_b20106 - transcriptional regulator, at 116,824 to 117,555 _b20106 SM_b20107: SM_b20107 - hypothetical protein, at 117,623 to 118,579 _b20107 Position (kb) 116 117Strain fitness (log2 ratio) -2 -1 0 1at 115.031 kb on - strandat 115.031 kb on - strandat 115.045 kb on - strandat 115.254 kb on - strand, within SM_b20104at 115.367 kb on + strand, within SM_b20104at 115.367 kb on + strand, within SM_b20104at 115.367 kb on + strand, within SM_b20104at 115.368 kb on - strand, within SM_b20104at 115.369 kb on + strand, within SM_b20104at 115.369 kb on + strand, within SM_b20104at 115.369 kb on + strand, within SM_b20104at 115.369 kb on + strand, within SM_b20104at 115.370 kb on - strand, within SM_b20104at 115.370 kb on - strand, within SM_b20104at 115.370 kb on - strand, within SM_b20104at 115.423 kb on - strand, within SM_b20104at 115.440 kb on - strand, within SM_b20104at 115.541 kb on + strand, within SM_b20104at 115.541 kb on + strandat 115.541 kb on + strand, within SM_b20104at 115.541 kb on + strand, within SM_b20104at 115.542 kb on - strand, within SM_b20104at 115.580 kb on - strand, within SM_b20104at 115.588 kb on - strand, within SM_b20104at 115.900 kb on + strandat 115.901 kb on - strandat 115.983 kb on + strandat 115.983 kb on + strandat 115.984 kb on - strandat 115.984 kb on - strandat 116.013 kb on + strandat 116.024 kb on + strandat 116.024 kb on + strandat 116.025 kb on - strandat 116.025 kb on - strandat 116.025 kb on - strandat 116.025 kb on - strandat 116.456 kb on + strand, within SM_b20105at 116.495 kb on + strand, within SM_b20105at 116.915 kb on + strand, within SM_b20106at 116.916 kb on - strand, within SM_b20106at 117.064 kb on + strand, within SM_b20106at 117.064 kb on + strand, within SM_b20106at 117.064 kb on + strand, within SM_b20106at 117.064 kb on + strand, within SM_b20106at 117.065 kb on - strand, within SM_b20106at 117.065 kb on - strand, within SM_b20106at 117.117 kb on + strand, within SM_b20106at 117.118 kb on - strand, within SM_b20106at 117.154 kb on + strand, within SM_b20106at 117.155 kb on - strand, within SM_b20106at 117.155 kb on - strand, within SM_b20106at 117.480 kb on - strand, within SM_b20106at 117.540 kb on + strandat 117.540 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
remove
115,031 - +1.3
115,031 - -0.1
115,045 - -1.6
115,254 - SM_b20104 0.13 -0.2
115,367 + SM_b20104 0.28 +0.1
115,367 + SM_b20104 0.28 -0.2
115,367 + SM_b20104 0.28 -0.5
115,368 - SM_b20104 0.28 +0.4
115,369 + SM_b20104 0.29 +0.4
115,369 + SM_b20104 0.29 -0.8
115,369 + SM_b20104 0.29 +0.1
115,369 + SM_b20104 0.29 -0.7
115,370 - SM_b20104 0.29 -0.3
115,370 - SM_b20104 0.29 +1.4
115,370 - SM_b20104 0.29 +0.8
115,423 - SM_b20104 0.36 -1.1
115,440 - SM_b20104 0.38 +0.7
115,541 + SM_b20104 0.51 -1.0
115,541 + +1.2
115,541 + SM_b20104 0.51 -0.4
115,541 + SM_b20104 0.51 +0.8
115,542 - SM_b20104 0.51 -0.2
115,580 - SM_b20104 0.56 -0.8
115,588 - SM_b20104 0.57 +0.6
115,900 + -0.7
115,901 - +0.5
115,983 + +1.1
115,983 + -0.2
115,984 - -1.0
115,984 - -0.3
116,013 + +1.3
116,024 + -0.1
116,024 + -1.2
116,025 - -0.4
116,025 - +0.1
116,025 - +0.3
116,025 - +0.8
116,456 + SM_b20105 0.70 -0.7
116,495 + SM_b20105 0.76 -2.4
116,915 + SM_b20106 0.12 +0.4
116,916 - SM_b20106 0.13 +0.5
117,064 + SM_b20106 0.33 -0.8
117,064 + SM_b20106 0.33 -0.5
117,064 + SM_b20106 0.33 -0.4
117,064 + SM_b20106 0.33 +0.5
117,065 - SM_b20106 0.33 +0.4
117,065 - SM_b20106 0.33 +0.1
117,117 + SM_b20106 0.40 -0.1
117,118 - SM_b20106 0.40 +0.4
117,154 + SM_b20106 0.45 -0.0
117,155 - SM_b20106 0.45 -0.1
117,155 - SM_b20106 0.45 -0.6
117,480 - SM_b20106 0.90 -0.5
117,540 + +0.2
117,540 + +0.6

Or see this region's nucleotide sequence