Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02859 and SMc02860 are separated by 4 nucleotides SMc02860 and SMc02861 are separated by 113 nucleotides SMc02861 and SMc02862 overlap by 1 nucleotides SMc02862 and SMc02863 are separated by 234 nucleotides
SMc02859: SMc02859 - hypothetical protein, at 213,276 to 214,160
SMc02859
SMc02860: SMc02860 - hypothetical protein, at 214,165 to 214,800
SMc02860
SMc02861: SMc02861 - phosphate transporter, at 214,914 to 215,918
SMc02861
SMc02862: SMc02862 - Pit accessory protein, at 215,918 to 216,562
SMc02862
SMc02863: SMc02863 - recombination protein F, at 216,797 to 217,921
SMc02863
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2 at 213.971 kb on + strand, within SMc02859 at 214.066 kb on + strand, within SMc02859 at 214.384 kb on - strand, within SMc02860 at 214.384 kb on - strand, within SMc02860 at 214.616 kb on - strand, within SMc02860 at 214.742 kb on + strand at 214.742 kb on + strand at 214.743 kb on - strand at 214.816 kb on + strand at 214.817 kb on - strand at 214.867 kb on + strand at 214.867 kb on + strand at 214.868 kb on - strand at 214.868 kb on - strand at 214.869 kb on + strand at 214.870 kb on - strand at 214.940 kb on - strand at 215.270 kb on - strand, within SMc02861 at 215.363 kb on - strand, within SMc02861 at 215.783 kb on - strand, within SMc02861 at 215.783 kb on - strand, within SMc02861 at 215.997 kb on + strand, within SMc02862 at 216.017 kb on - strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.765 kb on + strand at 216.766 kb on - strand at 216.766 kb on - strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.849 kb on - strand at 216.849 kb on - strand at 216.849 kb on - strand at 216.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 213,971 + SMc02859 0.79 -0.3 214,066 + SMc02859 0.89 +0.2 214,384 - SMc02860 0.34 -0.1 214,384 - SMc02860 0.34 +0.1 214,616 - SMc02860 0.71 -1.3 214,742 + +0.4 214,742 + +0.8 214,743 - +0.9 214,816 + -0.0 214,817 - -0.6 214,867 + -0.6 214,867 + -1.1 214,868 - -0.8 214,868 - -0.2 214,869 + -0.3 214,870 - +0.4 214,940 - -0.1 215,270 - SMc02861 0.35 -0.6 215,363 - SMc02861 0.45 -0.8 215,783 - SMc02861 0.86 -0.8 215,783 - SMc02861 0.86 -1.3 215,997 + SMc02862 0.12 -0.9 216,017 - SMc02862 0.15 -0.2 216,018 + SMc02862 0.16 -0.1 216,018 + SMc02862 0.16 +0.0 216,018 + SMc02862 0.16 +0.1 216,019 - SMc02862 0.16 -0.8 216,019 - SMc02862 0.16 -0.4 216,019 - SMc02862 0.16 -0.8 216,019 - SMc02862 0.16 -1.0 216,019 - SMc02862 0.16 -1.7 216,765 + -0.2 216,766 - +2.3 216,766 - +1.1 216,848 + -0.7 216,848 + -2.1 216,848 + +0.3 216,848 + +0.0 216,848 + +0.1 216,849 - +1.5 216,849 - +1.4 216,849 - +1.3 216,849 - +1.6
Or see this region's nucleotide sequence