Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00801 and SMc00802 are separated by 201 nucleotides SMc00802 and SMc00803 are separated by 260 nucleotides SMc00803 and SMc00804 are separated by 118 nucleotides
SMc00801: SMc00801 - hypothetical protein, at 820,589 to 821,245
SMc00801
SMc00802: SMc00802 - hypothetical protein, at 821,447 to 821,812
SMc00802
SMc00803: SMc00803 - hypothetical protein, at 822,073 to 822,888
SMc00803
SMc00804: SMc00804 - hypothetical protein, at 823,007 to 824,230
SMc00804
Position (kb) 822
823 Strain fitness (log2 ratio) -1
0
1
2 at 821.299 kb on - strand at 821.327 kb on + strand at 821.328 kb on - strand at 821.351 kb on + strand at 821.411 kb on + strand at 821.411 kb on + strand at 821.478 kb on + strand at 821.629 kb on + strand, within SMc00802 at 821.902 kb on + strand at 821.903 kb on - strand at 821.903 kb on - strand at 821.940 kb on + strand at 821.940 kb on + strand at 821.955 kb on - strand at 822.086 kb on + strand at 822.155 kb on + strand, within SMc00803 at 822.155 kb on + strand, within SMc00803 at 822.155 kb on + strand, within SMc00803 at 822.155 kb on + strand, within SMc00803 at 822.156 kb on - strand, within SMc00803 at 822.166 kb on + strand, within SMc00803 at 822.166 kb on + strand, within SMc00803 at 822.189 kb on - strand, within SMc00803 at 822.198 kb on - strand, within SMc00803 at 822.207 kb on - strand, within SMc00803 at 822.259 kb on - strand, within SMc00803 at 822.260 kb on + strand, within SMc00803 at 822.260 kb on + strand, within SMc00803 at 822.260 kb on + strand, within SMc00803 at 822.260 kb on + strand, within SMc00803 at 822.261 kb on - strand, within SMc00803 at 822.261 kb on - strand, within SMc00803 at 822.261 kb on - strand, within SMc00803 at 822.261 kb on - strand, within SMc00803 at 822.261 kb on - strand, within SMc00803 at 822.404 kb on + strand, within SMc00803 at 822.516 kb on + strand, within SMc00803 at 822.516 kb on + strand, within SMc00803 at 822.518 kb on + strand, within SMc00803 at 822.642 kb on + strand, within SMc00803 at 822.644 kb on + strand, within SMc00803 at 822.644 kb on + strand, within SMc00803 at 822.668 kb on + strand at 822.668 kb on + strand, within SMc00803 at 822.915 kb on + strand at 822.915 kb on + strand at 822.915 kb on + strand at 822.915 kb on + strand at 822.915 kb on + strand at 822.959 kb on + strand at 822.959 kb on + strand at 823.818 kb on + strand, within SMc00804 at 823.818 kb on + strand, within SMc00804
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 821,299 - +0.2 821,327 + +0.9 821,328 - +2.0 821,351 + +0.2 821,411 + +0.4 821,411 + +1.4 821,478 + -0.0 821,629 + SMc00802 0.50 -0.8 821,902 + -0.5 821,903 - +0.3 821,903 - -0.2 821,940 + +0.5 821,940 + -0.1 821,955 - +0.1 822,086 + +0.0 822,155 + SMc00803 0.10 -0.1 822,155 + SMc00803 0.10 +0.8 822,155 + SMc00803 0.10 +0.3 822,155 + SMc00803 0.10 +0.3 822,156 - SMc00803 0.10 +0.2 822,166 + SMc00803 0.11 +0.7 822,166 + SMc00803 0.11 -0.1 822,189 - SMc00803 0.14 +0.6 822,198 - SMc00803 0.15 +0.0 822,207 - SMc00803 0.16 +0.3 822,259 - SMc00803 0.23 +1.6 822,260 + SMc00803 0.23 -0.3 822,260 + SMc00803 0.23 +0.4 822,260 + SMc00803 0.23 +0.5 822,260 + SMc00803 0.23 +0.2 822,261 - SMc00803 0.23 -0.2 822,261 - SMc00803 0.23 -0.3 822,261 - SMc00803 0.23 +0.6 822,261 - SMc00803 0.23 +0.6 822,261 - SMc00803 0.23 +0.4 822,404 + SMc00803 0.41 -0.7 822,516 + SMc00803 0.54 +0.4 822,516 + SMc00803 0.54 -0.1 822,518 + SMc00803 0.55 -0.1 822,642 + SMc00803 0.70 -0.2 822,644 + SMc00803 0.70 -0.2 822,644 + SMc00803 0.70 +1.8 822,668 + +0.2 822,668 + SMc00803 0.73 +1.0 822,915 + +0.0 822,915 + -0.1 822,915 + +0.6 822,915 + +0.7 822,915 + +0.6 822,959 + +0.3 822,959 + -0.5 823,818 + SMc00804 0.66 -1.2 823,818 + SMc00804 0.66 -0.0
Or see this region's nucleotide sequence