Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0717 and SMa0719 are separated by 57 nucleotides SMa0719 and SMa0722 are separated by 98 nucleotides SMa0722 and SMa0723 are separated by 37 nucleotides
SMa0717: SMa0717 - hypothetical protein, at 389,265 to 390,974
SMa0717
SMa0719: SMa0719 - short-chain alcohol dehydrogenase, at 391,032 to 391,751
SMa0719
SMa0722: SMa0722 - transposase, at 391,850 to 392,461
SMa0722
SMa0723: SMa0723 - hypothetical protein, at 392,499 to 393,287
SMa0723
Position (kb) 391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 390.236 kb on + strand, within SMa0717 at 390.251 kb on + strand, within SMa0717 at 390.251 kb on + strand, within SMa0717 at 390.251 kb on + strand, within SMa0717 at 390.252 kb on - strand, within SMa0717 at 390.357 kb on - strand, within SMa0717 at 390.483 kb on + strand, within SMa0717 at 390.508 kb on + strand, within SMa0717 at 390.508 kb on + strand, within SMa0717 at 390.576 kb on + strand, within SMa0717 at 390.576 kb on + strand, within SMa0717 at 390.606 kb on + strand, within SMa0717 at 390.606 kb on + strand, within SMa0717 at 390.606 kb on + strand at 390.606 kb on + strand, within SMa0717 at 390.607 kb on - strand, within SMa0717 at 390.612 kb on + strand, within SMa0717 at 390.993 kb on + strand at 390.993 kb on + strand at 390.994 kb on - strand at 390.994 kb on - strand at 390.996 kb on - strand at 391.077 kb on + strand at 391.077 kb on + strand at 391.078 kb on - strand at 391.385 kb on + strand, within SMa0719 at 391.491 kb on - strand, within SMa0719 at 391.538 kb on - strand, within SMa0719 at 391.620 kb on + strand, within SMa0719 at 391.706 kb on + strand at 391.707 kb on - strand at 391.914 kb on - strand, within SMa0722 at 391.931 kb on - strand, within SMa0722 at 392.029 kb on - strand, within SMa0722 at 392.106 kb on + strand, within SMa0722 at 392.186 kb on + strand, within SMa0722 at 392.186 kb on + strand, within SMa0722 at 392.186 kb on + strand, within SMa0722 at 392.186 kb on + strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.187 kb on - strand, within SMa0722 at 392.259 kb on + strand, within SMa0722 at 392.445 kb on - strand at 392.617 kb on + strand, within SMa0723 at 392.618 kb on - strand, within SMa0723 at 392.740 kb on + strand, within SMa0723 at 392.741 kb on - strand, within SMa0723
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 390,236 + SMa0717 0.57 +1.1 390,251 + SMa0717 0.58 -0.5 390,251 + SMa0717 0.58 -2.3 390,251 + SMa0717 0.58 +1.2 390,252 - SMa0717 0.58 -0.5 390,357 - SMa0717 0.64 +0.3 390,483 + SMa0717 0.71 -0.9 390,508 + SMa0717 0.73 -0.1 390,508 + SMa0717 0.73 +0.4 390,576 + SMa0717 0.77 -0.3 390,576 + SMa0717 0.77 +0.3 390,606 + SMa0717 0.78 +0.2 390,606 + SMa0717 0.78 -0.3 390,606 + +0.1 390,606 + SMa0717 0.78 -0.7 390,607 - SMa0717 0.78 -0.0 390,612 + SMa0717 0.79 -0.0 390,993 + -0.5 390,993 + +0.0 390,994 - -1.5 390,994 - -0.3 390,996 - +0.7 391,077 + +0.3 391,077 + -0.0 391,078 - -0.1 391,385 + SMa0719 0.49 -1.0 391,491 - SMa0719 0.64 -1.5 391,538 - SMa0719 0.70 -1.3 391,620 + SMa0719 0.82 -0.1 391,706 + -1.5 391,707 - -0.1 391,914 - SMa0722 0.10 -0.7 391,931 - SMa0722 0.13 +0.7 392,029 - SMa0722 0.29 -0.7 392,106 + SMa0722 0.42 -0.7 392,186 + SMa0722 0.55 -0.8 392,186 + SMa0722 0.55 -0.2 392,186 + SMa0722 0.55 -3.2 392,186 + SMa0722 0.55 +0.4 392,187 - SMa0722 0.55 -0.3 392,187 - SMa0722 0.55 +0.7 392,187 - SMa0722 0.55 -0.3 392,187 - SMa0722 0.55 -0.1 392,187 - SMa0722 0.55 -0.6 392,187 - SMa0722 0.55 +1.5 392,187 - SMa0722 0.55 -0.3 392,187 - SMa0722 0.55 +0.0 392,259 + SMa0722 0.67 -0.8 392,445 - +0.4 392,617 + SMa0723 0.15 -0.1 392,618 - SMa0723 0.15 -0.6 392,740 + SMa0723 0.31 +0.1 392,741 - SMa0723 0.31 -0.5
Or see this region's nucleotide sequence