Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20900 and SM_b21679 are separated by 9 nucleotides SM_b21679 and SM_b20901 are separated by 125 nucleotides
SM_b20900: SM_b20900 - hypothetical protein, at 1,307,831 to 1,309,765
_b20900
SM_b21679: SM_b21679 - hypothetical protein, at 1,309,775 to 1,309,963
_b21679
SM_b20901: SM_b20901 - transcriptional regulator, at 1,310,089 to 1,311,300
_b20901
Position (kb)
1309
1310 Strain fitness (log2 ratio)
-1
0
1 at 1308.978 kb on + strand, within SM_b20900 at 1308.978 kb on + strand, within SM_b20900 at 1308.978 kb on + strand, within SM_b20900 at 1308.979 kb on - strand, within SM_b20900 at 1308.979 kb on - strand, within SM_b20900 at 1308.979 kb on - strand, within SM_b20900 at 1308.979 kb on - strand, within SM_b20900 at 1309.014 kb on + strand, within SM_b20900 at 1309.014 kb on + strand, within SM_b20900 at 1309.787 kb on + strand at 1309.787 kb on + strand at 1309.824 kb on + strand, within SM_b21679 at 1310.021 kb on - strand at 1310.159 kb on - strand at 1310.188 kb on + strand at 1310.189 kb on - strand at 1310.189 kb on - strand at 1310.369 kb on + strand, within SM_b20901 at 1310.370 kb on - strand, within SM_b20901 at 1310.370 kb on - strand, within SM_b20901 at 1310.489 kb on + strand, within SM_b20901 at 1310.489 kb on + strand, within SM_b20901 at 1310.489 kb on + strand, within SM_b20901 at 1310.519 kb on + strand, within SM_b20901 at 1310.519 kb on + strand, within SM_b20901 at 1310.562 kb on + strand, within SM_b20901 at 1310.562 kb on + strand, within SM_b20901 at 1310.562 kb on + strand, within SM_b20901 at 1310.562 kb on + strand, within SM_b20901 at 1310.562 kb on + strand, within SM_b20901 at 1310.562 kb on + strand, within SM_b20901 at 1310.563 kb on - strand, within SM_b20901 at 1310.563 kb on - strand, within SM_b20901
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 1,308,978 + SM_b20900 0.59 -0.0 1,308,978 + SM_b20900 0.59 +0.4 1,308,978 + SM_b20900 0.59 -0.2 1,308,979 - SM_b20900 0.59 +0.2 1,308,979 - SM_b20900 0.59 -0.1 1,308,979 - SM_b20900 0.59 -0.0 1,308,979 - SM_b20900 0.59 +0.3 1,309,014 + SM_b20900 0.61 -0.9 1,309,014 + SM_b20900 0.61 -0.4 1,309,787 + -1.0 1,309,787 + -0.3 1,309,824 + SM_b21679 0.26 -1.3 1,310,021 - -0.6 1,310,159 - -0.3 1,310,188 + -0.5 1,310,189 - +0.1 1,310,189 - -0.6 1,310,369 + SM_b20901 0.23 -0.1 1,310,370 - SM_b20901 0.23 -0.1 1,310,370 - SM_b20901 0.23 -0.6 1,310,489 + SM_b20901 0.33 +0.5 1,310,489 + SM_b20901 0.33 -0.2 1,310,489 + SM_b20901 0.33 -0.3 1,310,519 + SM_b20901 0.35 -0.2 1,310,519 + SM_b20901 0.35 +0.1 1,310,562 + SM_b20901 0.39 +0.5 1,310,562 + SM_b20901 0.39 -0.1 1,310,562 + SM_b20901 0.39 -0.6 1,310,562 + SM_b20901 0.39 -1.5 1,310,562 + SM_b20901 0.39 -0.5 1,310,562 + SM_b20901 0.39 -0.2 1,310,563 - SM_b20901 0.39 -1.0 1,310,563 - SM_b20901 0.39 -0.6
Or see this region's nucleotide sequence