Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20804

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20803 and SM_b20804 are separated by 42 nucleotidesSM_b20804 and SM_b20805 are separated by 62 nucleotides SM_b20803: SM_b20803 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 588,360 to 589,190 _b20803 SM_b20804: SM_b20804 - hypothetical protein, at 589,233 to 589,964 _b20804 SM_b20805: SM_b20805 - glycosyltransferase, at 590,027 to 590,932 _b20805 Position (kb) 589 590Strain fitness (log2 ratio) -2 -1 0 1 2at 588.259 kb on - strandat 588.269 kb on + strandat 588.272 kb on - strandat 588.272 kb on - strandat 588.308 kb on + strandat 588.433 kb on - strandat 588.451 kb on + strand, within SM_b20803at 588.606 kb on - strand, within SM_b20803at 588.606 kb on - strand, within SM_b20803at 588.817 kb on + strand, within SM_b20803at 588.817 kb on + strand, within SM_b20803at 588.818 kb on - strand, within SM_b20803at 588.978 kb on - strand, within SM_b20803at 589.109 kb on - strandat 589.189 kb on - strandat 589.189 kb on - strandat 589.192 kb on + strandat 589.193 kb on - strandat 589.267 kb on + strandat 589.267 kb on + strandat 589.268 kb on - strandat 589.268 kb on - strandat 589.270 kb on - strandat 589.331 kb on + strand, within SM_b20804at 589.348 kb on + strand, within SM_b20804at 589.349 kb on - strand, within SM_b20804at 589.463 kb on + strand, within SM_b20804at 589.464 kb on - strand, within SM_b20804at 589.464 kb on - strand, within SM_b20804at 589.464 kb on - strand, within SM_b20804at 589.554 kb on + strand, within SM_b20804at 589.554 kb on + strand, within SM_b20804at 589.555 kb on - strand, within SM_b20804at 589.558 kb on + strand, within SM_b20804at 589.558 kb on + strand, within SM_b20804at 589.558 kb on + strand, within SM_b20804at 589.559 kb on - strand, within SM_b20804at 589.559 kb on - strand, within SM_b20804at 589.559 kb on - strand, within SM_b20804at 589.731 kb on - strand, within SM_b20804at 589.755 kb on + strand, within SM_b20804at 589.816 kb on - strand, within SM_b20804at 589.974 kb on + strandat 589.974 kb on + strandat 589.974 kb on + strandat 589.975 kb on - strandat 590.082 kb on + strandat 590.083 kb on - strandat 590.242 kb on + strand, within SM_b20805at 590.365 kb on - strand, within SM_b20805at 590.388 kb on + strand, within SM_b20805at 590.388 kb on + strand, within SM_b20805at 590.431 kb on + strand, within SM_b20805at 590.432 kb on - strand, within SM_b20805at 590.432 kb on - strand, within SM_b20805at 590.432 kb on - strand, within SM_b20805at 590.457 kb on + strand, within SM_b20805at 590.458 kb on - strand, within SM_b20805at 590.508 kb on + strand, within SM_b20805at 590.534 kb on + strand, within SM_b20805at 590.579 kb on + strand, within SM_b20805at 590.747 kb on + strand, within SM_b20805at 590.751 kb on - strand, within SM_b20805at 590.751 kb on - strand, within SM_b20805at 590.751 kb on - strand, within SM_b20805at 590.765 kb on - strand, within SM_b20805at 590.765 kb on - strand, within SM_b20805at 590.830 kb on + strand, within SM_b20805at 590.831 kb on - strand, within SM_b20805at 590.833 kb on - strand, within SM_b20805at 590.904 kb on - strandat 590.953 kb on + strandat 590.963 kb on + strandat 590.963 kb on + strandat 590.964 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
remove
588,259 - +0.8
588,269 + +1.6
588,272 - +1.5
588,272 - +0.5
588,308 + -0.4
588,433 - +0.8
588,451 + SM_b20803 0.11 +0.5
588,606 - SM_b20803 0.30 -0.9
588,606 - SM_b20803 0.30 +1.1
588,817 + SM_b20803 0.55 +2.3
588,817 + SM_b20803 0.55 +0.7
588,818 - SM_b20803 0.55 +0.7
588,978 - SM_b20803 0.74 +0.6
589,109 - +0.0
589,189 - +1.0
589,189 - +1.1
589,192 + -1.8
589,193 - +0.9
589,267 + +0.4
589,267 + +1.5
589,268 - +0.6
589,268 - +1.2
589,270 - +1.1
589,331 + SM_b20804 0.13 -1.1
589,348 + SM_b20804 0.16 +2.2
589,349 - SM_b20804 0.16 +1.3
589,463 + SM_b20804 0.31 +0.2
589,464 - SM_b20804 0.32 +2.0
589,464 - SM_b20804 0.32 +1.1
589,464 - SM_b20804 0.32 +1.5
589,554 + SM_b20804 0.44 +1.2
589,554 + SM_b20804 0.44 +1.2
589,555 - SM_b20804 0.44 +0.9
589,558 + SM_b20804 0.44 +1.0
589,558 + SM_b20804 0.44 +0.5
589,558 + SM_b20804 0.44 +1.0
589,559 - SM_b20804 0.45 +0.8
589,559 - SM_b20804 0.45 +2.1
589,559 - SM_b20804 0.45 +1.2
589,731 - SM_b20804 0.68 +1.2
589,755 + SM_b20804 0.71 +1.3
589,816 - SM_b20804 0.80 +1.1
589,974 + -0.4
589,974 + +0.2
589,974 + -1.1
589,975 - +0.0
590,082 + +1.9
590,083 - +0.3
590,242 + SM_b20805 0.24 +0.5
590,365 - SM_b20805 0.37 +0.2
590,388 + SM_b20805 0.40 +1.4
590,388 + SM_b20805 0.40 +0.7
590,431 + SM_b20805 0.45 +0.7
590,432 - SM_b20805 0.45 +0.7
590,432 - SM_b20805 0.45 -0.2
590,432 - SM_b20805 0.45 +0.3
590,457 + SM_b20805 0.47 +1.0
590,458 - SM_b20805 0.48 +0.7
590,508 + SM_b20805 0.53 +1.1
590,534 + SM_b20805 0.56 +1.1
590,579 + SM_b20805 0.61 +1.1
590,747 + SM_b20805 0.79 +1.3
590,751 - SM_b20805 0.80 +0.7
590,751 - SM_b20805 0.80 +1.4
590,751 - SM_b20805 0.80 +1.4
590,765 - SM_b20805 0.81 +0.4
590,765 - SM_b20805 0.81 -0.2
590,830 + SM_b20805 0.89 +1.0
590,831 - SM_b20805 0.89 +1.0
590,833 - SM_b20805 0.89 -0.5
590,904 - +0.9
590,953 + -0.0
590,963 + -0.1
590,963 + +0.1
590,964 - -0.9

Or see this region's nucleotide sequence