Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20321 and SM_b20322 overlap by 1 nucleotides SM_b20322 and SM_b20323 are separated by 87 nucleotides SM_b20323 and SM_b20324 are separated by 21 nucleotides
SM_b20321: SM_b20321 - hypothetical protein, at 323,964 to 325,229
_b20321
SM_b20322: SM_b20322 - TRAP-type small permease component, at 325,229 to 325,834
_b20322
SM_b20323: SM_b20323 - transcriptional regulator, at 325,922 to 326,581
_b20323
SM_b20324: SM_b20324 - ThuR, regulatory protein for trehalosemaltose transport system, at 326,603 to 327,619
_b20324
Position (kb) 325
326 Strain fitness (log2 ratio) -1
0
1 at 324.355 kb on + strand, within SM_b20321 at 324.415 kb on + strand, within SM_b20321 at 324.416 kb on - strand, within SM_b20321 at 324.603 kb on - strand, within SM_b20321 at 324.603 kb on - strand, within SM_b20321 at 324.643 kb on + strand, within SM_b20321 at 324.649 kb on + strand, within SM_b20321 at 324.649 kb on + strand, within SM_b20321 at 324.650 kb on - strand, within SM_b20321 at 324.688 kb on - strand, within SM_b20321 at 324.728 kb on + strand, within SM_b20321 at 324.728 kb on + strand, within SM_b20321 at 324.729 kb on - strand, within SM_b20321 at 324.753 kb on + strand, within SM_b20321 at 324.761 kb on - strand, within SM_b20321 at 324.844 kb on + strand, within SM_b20321 at 324.844 kb on + strand, within SM_b20321 at 324.915 kb on + strand, within SM_b20321 at 324.952 kb on + strand, within SM_b20321 at 324.952 kb on + strand, within SM_b20321 at 324.952 kb on + strand at 324.952 kb on + strand, within SM_b20321 at 324.953 kb on - strand, within SM_b20321 at 325.075 kb on + strand, within SM_b20321 at 325.147 kb on + strand at 325.147 kb on + strand at 325.148 kb on - strand at 325.397 kb on - strand, within SM_b20322 at 325.398 kb on + strand, within SM_b20322 at 325.566 kb on + strand, within SM_b20322 at 325.651 kb on - strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.911 kb on - strand at 326.409 kb on - strand, within SM_b20323 at 326.641 kb on + strand at 326.642 kb on - strand at 326.642 kb on - strand at 326.642 kb on - strand at 326.787 kb on + strand, within SM_b20324 at 326.787 kb on + strand, within SM_b20324 at 326.787 kb on + strand, within SM_b20324 at 326.807 kb on + strand, within SM_b20324
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 324,355 + SM_b20321 0.31 +0.1 324,415 + SM_b20321 0.36 +0.2 324,416 - SM_b20321 0.36 +1.0 324,603 - SM_b20321 0.50 +0.0 324,603 - SM_b20321 0.50 -1.7 324,643 + SM_b20321 0.54 -0.4 324,649 + SM_b20321 0.54 +0.2 324,649 + SM_b20321 0.54 +0.5 324,650 - SM_b20321 0.54 -0.4 324,688 - SM_b20321 0.57 +0.9 324,728 + SM_b20321 0.60 +0.1 324,728 + SM_b20321 0.60 -0.3 324,729 - SM_b20321 0.60 -0.2 324,753 + SM_b20321 0.62 -0.1 324,761 - SM_b20321 0.63 -0.4 324,844 + SM_b20321 0.70 +0.6 324,844 + SM_b20321 0.70 -1.2 324,915 + SM_b20321 0.75 -0.0 324,952 + SM_b20321 0.78 +1.5 324,952 + SM_b20321 0.78 +0.2 324,952 + +0.9 324,952 + SM_b20321 0.78 +0.2 324,953 - SM_b20321 0.78 +0.4 325,075 + SM_b20321 0.88 +0.0 325,147 + +1.3 325,147 + -0.3 325,148 - +0.1 325,397 - SM_b20322 0.28 -0.5 325,398 + SM_b20322 0.28 -0.2 325,566 + SM_b20322 0.56 -1.0 325,651 - SM_b20322 0.70 -0.4 325,652 + SM_b20322 0.70 -0.6 325,652 + SM_b20322 0.70 -0.2 325,652 + SM_b20322 0.70 -0.1 325,911 - -0.5 326,409 - SM_b20323 0.74 -0.2 326,641 + -0.6 326,642 - -1.2 326,642 - -0.9 326,642 - -0.4 326,787 + SM_b20324 0.18 -0.1 326,787 + SM_b20324 0.18 -0.6 326,787 + SM_b20324 0.18 -0.6 326,807 + SM_b20324 0.20 -0.7
Or see this region's nucleotide sequence