Strain Fitness in Sinorhizobium meliloti 1021 around SMc01935

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01934 and SMc01935 are separated by 104 nucleotidesSMc01935 and SMc01376 are separated by 17 nucleotides SMc01934: SMc01934 - prolyl-tRNA synthetase, at 1,398,815 to 1,400,143 SMc01934 SMc01935: SMc01935 - hypothetical protein, at 1,400,248 to 1,401,474 SMc01935 SMc01376: SMc01376 - ABC transporter ATP-binding protein, at 1,401,492 to 1,402,178 SMc01376 Position (kb) 1400 1401 1402Strain fitness (log2 ratio) -2 -1 0 1at 1401.472 kb on + strandat 1401.472 kb on + strandat 1402.177 kb on - strandat 1402.312 kb on + strandat 1402.312 kb on + strandat 1402.410 kb on + strandat 1402.410 kb on + strandat 1402.411 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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1,401,472 + +1.5
1,401,472 + +0.5
1,402,177 - +0.2
1,402,312 + +0.2
1,402,312 + -1.8
1,402,410 + +0.2
1,402,410 + +0.3
1,402,411 - -0.1

Or see this region's nucleotide sequence