Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0447 and SMa0448 are separated by 375 nucleotides SMa0448 and SMa0450 are separated by 549 nucleotides
SMa0447: SMa0447 - hypothetical protein, at 238,528 to 239,649
SMa0447
SMa0448: SMa0448 - hypothetical protein, at 240,025 to 240,435
SMa0448
SMa0450: SMa0450 - hypothetical protein, at 240,985 to 241,272
SMa0450
Position (kb) 240
241 Strain fitness (log2 ratio) -2
-1
0
1
2 at 239.033 kb on + strand, within SMa0447 at 239.033 kb on + strand, within SMa0447 at 239.034 kb on - strand, within SMa0447 at 239.058 kb on - strand, within SMa0447 at 239.174 kb on - strand, within SMa0447 at 239.219 kb on + strand, within SMa0447 at 239.220 kb on - strand, within SMa0447 at 239.309 kb on + strand, within SMa0447 at 239.395 kb on - strand, within SMa0447 at 239.401 kb on - strand, within SMa0447 at 239.423 kb on - strand, within SMa0447 at 239.423 kb on - strand, within SMa0447 at 239.647 kb on + strand at 239.648 kb on - strand at 239.648 kb on - strand at 239.764 kb on + strand at 239.823 kb on + strand at 239.824 kb on - strand at 239.855 kb on + strand at 239.870 kb on - strand at 239.878 kb on + strand at 239.878 kb on + strand at 240.056 kb on + strand at 240.057 kb on - strand at 240.057 kb on - strand at 240.080 kb on + strand, within SMa0448 at 240.081 kb on - strand, within SMa0448 at 240.081 kb on - strand, within SMa0448 at 240.172 kb on + strand, within SMa0448 at 240.407 kb on - strand at 240.458 kb on + strand at 240.459 kb on - strand at 240.525 kb on + strand at 240.567 kb on - strand at 240.567 kb on - strand at 240.659 kb on + strand at 240.660 kb on - strand at 240.660 kb on - strand at 240.728 kb on - strand at 240.778 kb on - strand at 240.867 kb on + strand at 241.054 kb on + strand, within SMa0450 at 241.058 kb on + strand, within SMa0450 at 241.059 kb on - strand, within SMa0450 at 241.270 kb on + strand at 241.325 kb on - strand at 241.325 kb on - strand at 241.395 kb on + strand at 241.395 kb on + strand at 241.420 kb on + strand at 241.420 kb on + strand at 241.420 kb on + strand at 241.422 kb on + strand at 241.423 kb on - strand at 241.423 kb on - strand at 241.423 kb on - strand at 241.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 239,033 + SMa0447 0.45 +0.3 239,033 + SMa0447 0.45 +0.3 239,034 - SMa0447 0.45 -0.1 239,058 - SMa0447 0.47 -0.0 239,174 - SMa0447 0.58 +0.1 239,219 + SMa0447 0.62 +0.5 239,220 - SMa0447 0.62 +0.2 239,309 + SMa0447 0.70 -0.0 239,395 - SMa0447 0.77 -1.9 239,401 - SMa0447 0.78 -1.5 239,423 - SMa0447 0.80 -0.5 239,423 - SMa0447 0.80 -0.0 239,647 + -0.1 239,648 - -0.4 239,648 - -0.4 239,764 + +1.3 239,823 + +0.3 239,824 - +0.1 239,855 + -0.2 239,870 - +1.2 239,878 + +0.2 239,878 + +0.2 240,056 + +0.7 240,057 - -0.7 240,057 - +1.4 240,080 + SMa0448 0.13 -0.7 240,081 - SMa0448 0.14 +2.1 240,081 - SMa0448 0.14 +1.5 240,172 + SMa0448 0.36 -0.3 240,407 - +0.0 240,458 + +0.1 240,459 - +0.7 240,525 + -0.4 240,567 - -1.5 240,567 - +0.2 240,659 + -0.6 240,660 - +1.1 240,660 - -0.4 240,728 - +0.6 240,778 - -0.9 240,867 + +0.5 241,054 + SMa0450 0.24 +0.7 241,058 + SMa0450 0.25 +0.5 241,059 - SMa0450 0.26 +1.4 241,270 + -0.1 241,325 - -0.9 241,325 - +2.0 241,395 + +0.5 241,395 + -1.9 241,420 + +0.3 241,420 + -1.3 241,420 + +1.2 241,422 + -0.0 241,423 - -0.3 241,423 - +0.5 241,423 - -0.2 241,423 - +1.5
Or see this region's nucleotide sequence