Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21027 and SM_b21028 are separated by 214 nucleotides SM_b21028 and SM_b21029 are separated by 97 nucleotides SM_b21029 and SM_b21030 are separated by 144 nucleotides SM_b21030 and SM_b21031 are separated by 11 nucleotides
SM_b21027: SM_b21027 - hypothetical protein, at 648,788 to 649,504
_b21027
SM_b21028: SM_b21028 - hypothetical protein, at 649,719 to 649,880
_b21028
SM_b21029: SM_b21029 - hypothetical protein, at 649,978 to 650,502
_b21029
SM_b21030: SM_b21030 - hypothetical protein, at 650,647 to 651,096
_b21030
SM_b21031: SM_b21031 - hypothetical protein, at 651,108 to 651,719
_b21031
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 649.172 kb on - strand, within SM_b21027 at 649.172 kb on - strand, within SM_b21027 at 649.172 kb on - strand, within SM_b21027 at 649.175 kb on + strand, within SM_b21027 at 649.176 kb on - strand, within SM_b21027 at 649.176 kb on - strand, within SM_b21027 at 649.176 kb on - strand, within SM_b21027 at 649.420 kb on + strand, within SM_b21027 at 649.447 kb on + strand at 649.560 kb on + strand at 649.560 kb on + strand at 649.560 kb on + strand at 649.561 kb on - strand at 649.611 kb on - strand at 649.644 kb on + strand at 649.645 kb on - strand at 649.654 kb on + strand at 649.657 kb on - strand at 649.657 kb on - strand at 649.707 kb on + strand at 649.707 kb on + strand at 649.707 kb on + strand at 649.708 kb on - strand at 649.708 kb on - strand at 649.711 kb on + strand at 649.712 kb on - strand at 649.712 kb on - strand at 649.758 kb on + strand, within SM_b21028 at 649.825 kb on + strand, within SM_b21028 at 649.845 kb on + strand, within SM_b21028 at 649.846 kb on - strand, within SM_b21028 at 649.900 kb on + strand at 649.900 kb on + strand at 649.901 kb on - strand at 649.925 kb on - strand at 649.929 kb on - strand at 649.936 kb on - strand at 649.936 kb on - strand at 649.977 kb on + strand at 649.977 kb on + strand at 649.977 kb on + strand at 649.977 kb on + strand at 649.977 kb on + strand at 649.978 kb on - strand at 649.978 kb on - strand at 650.129 kb on - strand, within SM_b21029 at 650.136 kb on + strand, within SM_b21029 at 650.214 kb on - strand, within SM_b21029 at 650.281 kb on - strand, within SM_b21029 at 650.345 kb on + strand, within SM_b21029 at 650.346 kb on - strand, within SM_b21029 at 650.436 kb on + strand, within SM_b21029 at 650.436 kb on + strand, within SM_b21029 at 650.437 kb on - strand, within SM_b21029 at 650.437 kb on - strand, within SM_b21029 at 650.500 kb on + strand at 650.500 kb on + strand at 650.550 kb on + strand at 650.550 kb on + strand at 650.551 kb on - strand at 650.556 kb on + strand at 650.556 kb on + strand at 650.556 kb on + strand at 650.556 kb on + strand at 650.557 kb on - strand at 650.589 kb on - strand at 650.754 kb on + strand, within SM_b21030 at 651.080 kb on - strand at 651.080 kb on - strand at 651.080 kb on - strand at 651.300 kb on + strand, within SM_b21031 at 651.315 kb on + strand, within SM_b21031 at 651.315 kb on + strand, within SM_b21031 at 651.316 kb on - strand, within SM_b21031 at 651.316 kb on - strand, within SM_b21031 at 651.316 kb on - strand, within SM_b21031 at 651.395 kb on + strand, within SM_b21031 at 651.396 kb on - strand, within SM_b21031 at 651.431 kb on + strand, within SM_b21031 at 651.432 kb on - strand, within SM_b21031 at 651.466 kb on - strand, within SM_b21031
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 649,172 - SM_b21027 0.54 +0.2 649,172 - SM_b21027 0.54 +0.9 649,172 - SM_b21027 0.54 +0.1 649,175 + SM_b21027 0.54 +1.0 649,176 - SM_b21027 0.54 -0.2 649,176 - SM_b21027 0.54 +0.6 649,176 - SM_b21027 0.54 -0.0 649,420 + SM_b21027 0.88 -0.6 649,447 + -1.3 649,560 + -0.7 649,560 + +0.3 649,560 + +0.2 649,561 - +0.6 649,611 - +1.2 649,644 + +0.1 649,645 - -0.0 649,654 + -0.1 649,657 - +0.1 649,657 - +0.1 649,707 + +0.3 649,707 + +0.5 649,707 + -0.2 649,708 - +0.1 649,708 - +1.1 649,711 + -0.0 649,712 - +1.0 649,712 - +1.5 649,758 + SM_b21028 0.24 +0.2 649,825 + SM_b21028 0.65 -2.8 649,845 + SM_b21028 0.78 +0.3 649,846 - SM_b21028 0.78 -0.4 649,900 + +0.1 649,900 + -0.1 649,901 - -0.5 649,925 - -0.7 649,929 - +0.1 649,936 - +0.5 649,936 - -1.8 649,977 + -0.6 649,977 + -0.1 649,977 + +0.3 649,977 + +0.1 649,977 + -1.0 649,978 - +0.6 649,978 - +0.1 650,129 - SM_b21029 0.29 -1.8 650,136 + SM_b21029 0.30 -1.1 650,214 - SM_b21029 0.45 -1.1 650,281 - SM_b21029 0.58 -0.5 650,345 + SM_b21029 0.70 -0.5 650,346 - SM_b21029 0.70 -1.3 650,436 + SM_b21029 0.87 -1.0 650,436 + SM_b21029 0.87 +0.4 650,437 - SM_b21029 0.87 -0.0 650,437 - SM_b21029 0.87 +0.2 650,500 + -0.4 650,500 + -0.2 650,550 + +0.9 650,550 + +0.5 650,551 - -0.0 650,556 + +0.2 650,556 + -0.5 650,556 + -0.2 650,556 + +0.3 650,557 - +0.6 650,589 - -0.5 650,754 + SM_b21030 0.24 +0.9 651,080 - -0.1 651,080 - -0.3 651,080 - +0.5 651,300 + SM_b21031 0.31 +0.2 651,315 + SM_b21031 0.34 -0.0 651,315 + SM_b21031 0.34 +0.3 651,316 - SM_b21031 0.34 +0.0 651,316 - SM_b21031 0.34 -0.1 651,316 - SM_b21031 0.34 -0.1 651,395 + SM_b21031 0.47 -0.0 651,396 - SM_b21031 0.47 +0.7 651,431 + SM_b21031 0.53 +0.1 651,432 - SM_b21031 0.53 -0.5 651,466 - SM_b21031 0.58 +0.7
Or see this region's nucleotide sequence