Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20803 and SM_b20804 are separated by 42 nucleotides SM_b20804 and SM_b20805 are separated by 62 nucleotides
SM_b20803: SM_b20803 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 588,360 to 589,190
_b20803
SM_b20804: SM_b20804 - hypothetical protein, at 589,233 to 589,964
_b20804
SM_b20805: SM_b20805 - glycosyltransferase, at 590,027 to 590,932
_b20805
Position (kb) 589
590 Strain fitness (log2 ratio) -1
0
1
2 at 588.259 kb on - strand at 588.269 kb on + strand at 588.272 kb on - strand at 588.272 kb on - strand at 588.308 kb on + strand at 588.433 kb on - strand at 588.451 kb on + strand, within SM_b20803 at 588.606 kb on - strand, within SM_b20803 at 588.606 kb on - strand, within SM_b20803 at 588.817 kb on + strand, within SM_b20803 at 588.817 kb on + strand, within SM_b20803 at 588.818 kb on - strand, within SM_b20803 at 588.978 kb on - strand, within SM_b20803 at 589.109 kb on - strand at 589.189 kb on - strand at 589.189 kb on - strand at 589.192 kb on + strand at 589.193 kb on - strand at 589.267 kb on + strand at 589.267 kb on + strand at 589.268 kb on - strand at 589.268 kb on - strand at 589.270 kb on - strand at 589.331 kb on + strand, within SM_b20804 at 589.348 kb on + strand, within SM_b20804 at 589.349 kb on - strand, within SM_b20804 at 589.463 kb on + strand, within SM_b20804 at 589.464 kb on - strand, within SM_b20804 at 589.464 kb on - strand, within SM_b20804 at 589.464 kb on - strand, within SM_b20804 at 589.554 kb on + strand, within SM_b20804 at 589.554 kb on + strand, within SM_b20804 at 589.555 kb on - strand, within SM_b20804 at 589.558 kb on + strand, within SM_b20804 at 589.558 kb on + strand, within SM_b20804 at 589.558 kb on + strand, within SM_b20804 at 589.559 kb on - strand, within SM_b20804 at 589.559 kb on - strand, within SM_b20804 at 589.559 kb on - strand, within SM_b20804 at 589.731 kb on - strand, within SM_b20804 at 589.755 kb on + strand, within SM_b20804 at 589.816 kb on - strand, within SM_b20804 at 589.974 kb on + strand at 589.974 kb on + strand at 589.974 kb on + strand at 589.975 kb on - strand at 590.082 kb on + strand at 590.083 kb on - strand at 590.242 kb on + strand, within SM_b20805 at 590.365 kb on - strand, within SM_b20805 at 590.388 kb on + strand, within SM_b20805 at 590.388 kb on + strand, within SM_b20805 at 590.431 kb on + strand, within SM_b20805 at 590.432 kb on - strand, within SM_b20805 at 590.432 kb on - strand, within SM_b20805 at 590.432 kb on - strand, within SM_b20805 at 590.457 kb on + strand, within SM_b20805 at 590.458 kb on - strand, within SM_b20805 at 590.508 kb on + strand, within SM_b20805 at 590.534 kb on + strand, within SM_b20805 at 590.579 kb on + strand, within SM_b20805 at 590.747 kb on + strand, within SM_b20805 at 590.751 kb on - strand, within SM_b20805 at 590.751 kb on - strand, within SM_b20805 at 590.751 kb on - strand, within SM_b20805 at 590.765 kb on - strand, within SM_b20805 at 590.765 kb on - strand, within SM_b20805 at 590.830 kb on + strand, within SM_b20805 at 590.831 kb on - strand, within SM_b20805 at 590.833 kb on - strand, within SM_b20805 at 590.904 kb on - strand at 590.953 kb on + strand at 590.963 kb on + strand at 590.963 kb on + strand at 590.964 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 588,259 - +0.8 588,269 + -1.5 588,272 - +0.9 588,272 - +1.0 588,308 + -0.7 588,433 - +1.4 588,451 + SM_b20803 0.11 +0.4 588,606 - SM_b20803 0.30 +1.0 588,606 - SM_b20803 0.30 +2.2 588,817 + SM_b20803 0.55 +1.5 588,817 + SM_b20803 0.55 +0.9 588,818 - SM_b20803 0.55 +0.6 588,978 - SM_b20803 0.74 +0.1 589,109 - +0.8 589,189 - +0.4 589,189 - +0.5 589,192 + -1.1 589,193 - +1.5 589,267 + +0.9 589,267 + +0.7 589,268 - +0.6 589,268 - +0.5 589,270 - +0.2 589,331 + SM_b20804 0.13 -1.1 589,348 + SM_b20804 0.16 +1.9 589,349 - SM_b20804 0.16 +0.9 589,463 + SM_b20804 0.31 +0.3 589,464 - SM_b20804 0.32 +1.8 589,464 - SM_b20804 0.32 +1.0 589,464 - SM_b20804 0.32 +1.1 589,554 + SM_b20804 0.44 +1.0 589,554 + SM_b20804 0.44 +1.0 589,555 - SM_b20804 0.44 +1.3 589,558 + SM_b20804 0.44 +0.9 589,558 + SM_b20804 0.44 +0.9 589,558 + SM_b20804 0.44 +1.2 589,559 - SM_b20804 0.45 +1.3 589,559 - SM_b20804 0.45 +2.1 589,559 - SM_b20804 0.45 +1.0 589,731 - SM_b20804 0.68 +1.1 589,755 + SM_b20804 0.71 +1.4 589,816 - SM_b20804 0.80 +1.8 589,974 + -1.7 589,974 + -1.3 589,974 + -1.6 589,975 - +0.8 590,082 + +0.6 590,083 - +0.1 590,242 + SM_b20805 0.24 +0.7 590,365 - SM_b20805 0.37 +0.0 590,388 + SM_b20805 0.40 +0.8 590,388 + SM_b20805 0.40 +0.5 590,431 + SM_b20805 0.45 +0.7 590,432 - SM_b20805 0.45 +0.3 590,432 - SM_b20805 0.45 +0.2 590,432 - SM_b20805 0.45 +0.6 590,457 + SM_b20805 0.47 +1.3 590,458 - SM_b20805 0.48 -0.2 590,508 + SM_b20805 0.53 +0.7 590,534 + SM_b20805 0.56 +1.3 590,579 + SM_b20805 0.61 +1.7 590,747 + SM_b20805 0.79 +0.0 590,751 - SM_b20805 0.80 -0.1 590,751 - SM_b20805 0.80 +0.1 590,751 - SM_b20805 0.80 +2.1 590,765 - SM_b20805 0.81 +0.9 590,765 - SM_b20805 0.81 +0.2 590,830 + SM_b20805 0.89 +0.4 590,831 - SM_b20805 0.89 +0.7 590,833 - SM_b20805 0.89 +0.5 590,904 - +0.5 590,953 + -0.4 590,963 + +0.2 590,963 + -0.2 590,964 - -0.2
Or see this region's nucleotide sequence